Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0003_M12
         (433 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z82276-1|CAB05238.1|  319|Caenorhabditis elegans Hypothetical pr...    29   1.4  
Z75533-3|CAA99822.1|  868|Caenorhabditis elegans Hypothetical pr...    29   1.4  
U29157-1|AAA68423.4|  675|Caenorhabditis elegans Hypothetical pr...    27   4.4  

>Z82276-1|CAB05238.1|  319|Caenorhabditis elegans Hypothetical
           protein K03D3.1 protein.
          Length = 319

 Score = 29.1 bits (62), Expect = 1.4
 Identities = 21/66 (31%), Positives = 32/66 (48%), Gaps = 5/66 (7%)
 Frame = +2

Query: 161 YTGQVVFCMKLVLVEKVVNAVIVYRLIDILKSSELKEFYIFF-----AIYKLLFLEYF*R 325
           +  + ++ + LV+  K V  +IVY L +  K   L  F I+F      +Y LLFL     
Sbjct: 149 FINKQIWKLYLVMFLKEVVLIIVYSLTEFNKEEGLTHFGIYFITVVLVLYALLFLSTVFY 208

Query: 326 VYIIFS 343
           + II S
Sbjct: 209 IPIIIS 214


>Z75533-3|CAA99822.1|  868|Caenorhabditis elegans Hypothetical
           protein C54G4.4 protein.
          Length = 868

 Score = 29.1 bits (62), Expect = 1.4
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = +2

Query: 227 VYRLIDILKSSELKEFYIFFAIYKLLFLEYF*RV 328
           +  L+ +  +   K F +F  +Y+LLFL +F RV
Sbjct: 112 IQTLLSLFPTIHSKHFLLFMVLYQLLFLLFFRRV 145


>U29157-1|AAA68423.4|  675|Caenorhabditis elegans Hypothetical
           protein C34D10.2 protein.
          Length = 675

 Score = 27.5 bits (58), Expect = 4.4
 Identities = 11/19 (57%), Positives = 12/19 (63%)
 Frame = +1

Query: 16  LSGDCEDNYHKIVYKTANC 72
           +SGD E  YH   YKTA C
Sbjct: 113 VSGDVERKYHLRYYKTAQC 131


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,653,298
Number of Sequences: 27780
Number of extensions: 130521
Number of successful extensions: 309
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 303
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 309
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 724655464
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)