Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0003_M11
         (448 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC8C9.15c |tif225||translation initiation factor eIF2B epsilon...    29   0.43 
SPBC32F12.01c ||SPBC685.10c|inositol phosphosphingolipid phospho...    26   3.0  
SPBC24C6.10c |||conserved eukaryotic protein|Schizosaccharomyces...    25   4.0  
SPBC1271.02 |stt3||oligosaccharyltransferase subunit Stt3|Schizo...    25   4.0  
SPBC16A3.10 |||membrane bound O-acyltransferase, MBOAT |Schizosa...    25   4.0  
SPAC1851.04c ||SPAC27D7.01c|guanyl-nucleotide exchange factor |S...    25   7.0  
SPBC29A10.06c |||conserved fungal protein|Schizosaccharomyces po...    24   9.3  
SPBC32H8.06 |mug93||TPR repeat protein, meiotically spliced|Schi...    24   9.3  
SPBC23E6.08 |sat1||Golgi membrane exchange factor subunit Sat1 |...    24   9.3  

>SPAC8C9.15c |tif225||translation initiation factor eIF2B epsilon
           subunit|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 678

 Score = 28.7 bits (61), Expect = 0.43
 Identities = 17/58 (29%), Positives = 33/58 (56%), Gaps = 2/58 (3%)
 Frame = +3

Query: 39  VEIRHKLI--YLNYCNR**EIPTCESTISHFQDVKTIFDYQLLTTILRGNIIYAELAK 206
           +E+R+ LI   ++ C+   ++P   +    +QD++  F Y +LT+ L G  I+  +AK
Sbjct: 212 LEVRNDLIDCQIDICSN--DVPALFTENFDYQDIRKDFVYGVLTSDLLGKKIHCHVAK 267


>SPBC32F12.01c ||SPBC685.10c|inositol phosphosphingolipid
           phospholipase C |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 424

 Score = 25.8 bits (54), Expect = 3.0
 Identities = 9/35 (25%), Positives = 22/35 (62%)
 Frame = +3

Query: 90  EIPTCESTISHFQDVKTIFDYQLLTTILRGNIIYA 194
           ++  C+  I   Q+V +I+D+Q +  ++  N++Y+
Sbjct: 36  KLAKCDYDIVLLQEVWSIYDFQEIRNLVSCNLVYS 70


>SPBC24C6.10c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 374

 Score = 25.4 bits (53), Expect = 4.0
 Identities = 17/67 (25%), Positives = 32/67 (47%)
 Frame = +2

Query: 122 FSRRQNNI*LPATYYHFAREYYICRTCKMTDALCHLVVHGNEILELKLVRSTEDLEDDDT 301
           F  R  N+   +  Y     YYICR+ +++      +V  +E   + L +++E+  +D+ 
Sbjct: 132 FKDRSENVAFTSFRYALFLVYYICRSRRLSPT---DLVAIDEYFLVNLFKTSEEAWNDED 188

Query: 302 SFSPDMC 322
             S  MC
Sbjct: 189 MDSFGMC 195


>SPBC1271.02 |stt3||oligosaccharyltransferase subunit
           Stt3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 752

 Score = 25.4 bits (53), Expect = 4.0
 Identities = 9/15 (60%), Positives = 13/15 (86%)
 Frame = +3

Query: 276 QKIWKMMIQVLVLIC 320
           QK WK+ ++VL+LIC
Sbjct: 17  QKDWKIPLKVLILIC 31


>SPBC16A3.10 |||membrane bound O-acyltransferase, MBOAT
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 509

 Score = 25.4 bits (53), Expect = 4.0
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = +3

Query: 315 ICATRFVERMKIY*GTLTCTSNCCIVHAV 401
           +C T FV RMK Y G    +   CI+  +
Sbjct: 260 VCITAFVARMKYY-GAWELSDGACILSGI 287


>SPAC1851.04c ||SPAC27D7.01c|guanyl-nucleotide exchange factor
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1052

 Score = 24.6 bits (51), Expect = 7.0
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = +1

Query: 100 HVNQLYHIFKTSKQYLITSYLLPF 171
           + N + +    SKQ++ T Y+LPF
Sbjct: 415 NTNDVLYSITDSKQFISTIYILPF 438


>SPBC29A10.06c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 295

 Score = 24.2 bits (50), Expect = 9.3
 Identities = 10/29 (34%), Positives = 14/29 (48%)
 Frame = +2

Query: 149 LPATYYHFAREYYICRTCKMTDALCHLVV 235
           LP  Y H    YY     K  +A+ HL++
Sbjct: 109 LPKNYQHLMDGYYYLDRLKFEEAINHLLL 137


>SPBC32H8.06 |mug93||TPR repeat protein, meiotically
           spliced|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 383

 Score = 24.2 bits (50), Expect = 9.3
 Identities = 14/43 (32%), Positives = 20/43 (46%)
 Frame = +2

Query: 137 NNI*LPATYYHFAREYYICRTCKMTDALCHLVVHGNEILELKL 265
           NN  +  + +     YYI R C  T  L HL V  ++ L + L
Sbjct: 107 NNTYIQKSLHRLKEVYYIYRECAETWQLRHLRVASSQQLPVGL 149


>SPBC23E6.08 |sat1||Golgi membrane exchange factor subunit Sat1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 550

 Score = 24.2 bits (50), Expect = 9.3
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = +2

Query: 218 LCHLVVHGNEILELKLVRSTE 280
           LC+  +HG   L+  LVR TE
Sbjct: 40  LCYASIHGEMYLDYVLVRVTE 60


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,849,426
Number of Sequences: 5004
Number of extensions: 36858
Number of successful extensions: 92
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 90
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 92
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 164204010
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)