Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0003_M11
(448 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_06_0136 + 20481305-20481725,20483256-20483950 30 0.97
08_02_1277 + 25823835-25825113,25825201-25825418,25825501-258257... 30 0.97
09_02_0578 + 10869627-10869702,10870489-10870555,10870813-108709... 29 1.7
08_02_0546 - 18474217-18475133,18475207-18475396,18475870-184763... 28 3.9
03_05_0176 + 21546952-21547887,21548856-21548921,21549959-215508... 27 5.2
01_06_1656 + 38946922-38947542,38947640-38947739,38948045-389481... 27 5.2
12_01_0014 + 105422-105520,105598-105725,105939-106101,106198-10... 27 6.9
11_01_0014 + 108647-108816,109704-109803,109891-110018,110232-11... 27 6.9
05_05_0362 + 24415257-24415481,24415585-24415835,24416659-244167... 27 9.1
>11_06_0136 + 20481305-20481725,20483256-20483950
Length = 371
Score = 29.9 bits (64), Expect = 0.97
Identities = 17/47 (36%), Positives = 21/47 (44%), Gaps = 1/47 (2%)
Frame = +2
Query: 221 CHLVVH-GNEILELKLVRSTEDLEDDDTSFSPDMCHQVCGENENILG 358
CHL+V G E + D DDT FS C + NEN+ G
Sbjct: 221 CHLLVRRGREGAHNIITAQGRDKPGDDTGFSFQNCSIMAKPNENLTG 267
>08_02_1277 +
25823835-25825113,25825201-25825418,25825501-25825724,
25826468-25827080,25827735-25827775,25830549-25831191,
25832595-25834012,25834110-25834251,25834415-25834522,
25835346-25835558,25835643-25835753,25836099-25836293,
25836555-25836695,25836835-25836909
Length = 1806
Score = 29.9 bits (64), Expect = 0.97
Identities = 18/58 (31%), Positives = 28/58 (48%), Gaps = 2/58 (3%)
Frame = +2
Query: 272 STEDLEDDDTS--FSPDMCHQVCGENENILGYTDLHIKLLYSACSLQTYLRIDYTDKI 439
S EDL D++T+ +S + C + G + + L K LY LRIDY ++
Sbjct: 455 SIEDLYDNETNSCYSEESCSTMSGSHHSTLDRLYTWEKKLYKEVKAGERLRIDYEKRL 512
>09_02_0578 +
10869627-10869702,10870489-10870555,10870813-10870963,
10871043-10871111,10871992-10872030,10872113-10872186,
10872281-10872347,10872902-10873075,10873169-10873852
Length = 466
Score = 29.1 bits (62), Expect = 1.7
Identities = 15/47 (31%), Positives = 22/47 (46%)
Frame = +2
Query: 293 DDTSFSPDMCHQVCGENENILGYTDLHIKLLYSACSLQTYLRIDYTD 433
+ TS P + GE+ I GY +L I + SA S Y I + +
Sbjct: 72 NSTSLQPFDLNHFFGEDGKIYGYKNLKINVWISAISFHAYADISFEE 118
>08_02_0546 -
18474217-18475133,18475207-18475396,18475870-18476313,
18476629-18477495,18478858-18479367
Length = 975
Score = 27.9 bits (59), Expect = 3.9
Identities = 15/51 (29%), Positives = 27/51 (52%), Gaps = 3/51 (5%)
Frame = +2
Query: 224 HLVVHGNEILELKL---VRSTEDLEDDDTSFSPDMCHQVCGENENILGYTD 367
H V+ G +EL ++ TE ++D T+ PD C + +I+G+T+
Sbjct: 339 HFVMSGQADIELLSGAGIQLTEVVKDAKTTKDPDYCDVLISTINSIMGWTE 389
>03_05_0176 +
21546952-21547887,21548856-21548921,21549959-21550877,
21551277-21551449,21551927-21552475
Length = 880
Score = 27.5 bits (58), Expect = 5.2
Identities = 13/36 (36%), Positives = 22/36 (61%)
Frame = +2
Query: 203 KMTDALCHLVVHGNEILELKLVRSTEDLEDDDTSFS 310
KM D++ HL+ HG +++ ++L T +L D T S
Sbjct: 638 KMADSVGHLIEHGQQLVAIRLA-CTLNLTDKYTPLS 672
>01_06_1656 +
38946922-38947542,38947640-38947739,38948045-38948189,
38948868-38948991,38949443-38949960,38950111-38950458,
38950557-38950638,38951309-38951707,38951790-38951927,
38952063-38952108,38952200-38952369
Length = 896
Score = 27.5 bits (58), Expect = 5.2
Identities = 11/31 (35%), Positives = 21/31 (67%)
Frame = +2
Query: 254 ELKLVRSTEDLEDDDTSFSPDMCHQVCGENE 346
ELKL ++++++ ++ S + D CH + ENE
Sbjct: 534 ELKLQKTSDNMLEEILSPNEDTCHNLSQENE 564
>12_01_0014 +
105422-105520,105598-105725,105939-106101,106198-106310,
106787-106825,107026-107109,107193-107241,107331-107422,
107680-107809,107906-107982,108058-109676,110024-110221,
110287-110825
Length = 1109
Score = 27.1 bits (57), Expect = 6.9
Identities = 12/43 (27%), Positives = 20/43 (46%)
Frame = +2
Query: 98 YM*INYITFSRRQNNI*LPATYYHFAREYYICRTCKMTDALCH 226
Y + YIT+++ + I ++F E + R C T CH
Sbjct: 177 YADVRYITYAKEEEAIRCIQAVHNFVLEGKVLRACFGTTKYCH 219
>11_01_0014 +
108647-108816,109704-109803,109891-110018,110232-110394,
110491-110603,111080-111118,111319-111402,111486-111534,
111624-111715,111999-112128,112225-112301,112377-113995,
114348-114545,114635-115173
Length = 1166
Score = 27.1 bits (57), Expect = 6.9
Identities = 12/43 (27%), Positives = 20/43 (46%)
Frame = +2
Query: 98 YM*INYITFSRRQNNI*LPATYYHFAREYYICRTCKMTDALCH 226
Y + YIT+++ + I ++F E + R C T CH
Sbjct: 234 YADVRYITYAKEEEAIRCIQAVHNFVLEGKVLRACFGTTKYCH 276
>05_05_0362 +
24415257-24415481,24415585-24415835,24416659-24416755,
24417272-24417820,24418029-24418482,24418747-24418860,
24418940-24419023,24419499-24420067
Length = 780
Score = 26.6 bits (56), Expect = 9.1
Identities = 16/56 (28%), Positives = 25/56 (44%), Gaps = 1/56 (1%)
Frame = +2
Query: 134 QNNI*LPATYYHFAR-EYYICRTCKMTDALCHLVVHGNEILELKLVRSTEDLEDDD 298
+ N+ LP T Y Y + CK+ + LC + ++ L R + EDDD
Sbjct: 169 KTNLLLPGTLYPLLPGTLYPLQECKIVNNLCAIYSTTMDMRARYLARKRREEEDDD 224
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,034,991
Number of Sequences: 37544
Number of extensions: 204737
Number of successful extensions: 432
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 428
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 432
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 859680288
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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