Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0003_M11
         (448 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z49128-4|CAA88954.1|  541|Caenorhabditis elegans Hypothetical pr...    42   3e-04
U50300-1|AAC48108.2|  349|Caenorhabditis elegans Serpentine rece...    33   0.095
AF098996-4|AAC68705.1|  888|Caenorhabditis elegans Hypothetical ...    28   3.6  
AC006634-1|AAF39796.1|  231|Caenorhabditis elegans Hypothetical ...    27   4.7  

>Z49128-4|CAA88954.1|  541|Caenorhabditis elegans Hypothetical
           protein M03C11.4 protein.
          Length = 541

 Score = 41.5 bits (93), Expect = 3e-04
 Identities = 16/66 (24%), Positives = 39/66 (59%)
 Frame = +2

Query: 239 GNEILELKLVRSTEDLEDDDTSFSPDMCHQVCGENENILGYTDLHIKLLYSACSLQTYLR 418
           G  ++++  +++ +++      + P+M +Q  G+ E I GY DL + + ++A +L +Y+ 
Sbjct: 149 GLAVVKMTFLKNMQEISTAPR-YEPEMVYQHFGDEETIFGYEDLEVTIHHTAQTLYSYIN 207

Query: 419 IDYTDK 436
           + Y+ K
Sbjct: 208 VSYSSK 213


>U50300-1|AAC48108.2|  349|Caenorhabditis elegans Serpentine
           receptor, class x protein3 protein.
          Length = 349

 Score = 33.1 bits (72), Expect = 0.095
 Identities = 17/43 (39%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
 Frame = +1

Query: 91  RYLHVN-QLYHIFKTSKQYLITSYLLPFCAGILYMQNLQND*C 216
           RYL +  Q +HIF T+   LI  +L+PF  G++Y     N  C
Sbjct: 110 RYLVICLQKHHIFTTTTTILIFLFLIPFSFGLMYNSQYVNPCC 152


>AF098996-4|AAC68705.1|  888|Caenorhabditis elegans Hypothetical
           protein T11F1.8 protein.
          Length = 888

 Score = 27.9 bits (59), Expect = 3.6
 Identities = 11/35 (31%), Positives = 17/35 (48%)
 Frame = +2

Query: 233 VHGNEILELKLVRSTEDLEDDDTSFSPDMCHQVCG 337
           V  NE+ ++K   +  +L  +   F P  C  VCG
Sbjct: 24  VRANELCDVKCTFNHSELTSETIKFFPKKCKAVCG 58


>AC006634-1|AAF39796.1|  231|Caenorhabditis elegans Hypothetical
           protein F35F11.3 protein.
          Length = 231

 Score = 27.5 bits (58), Expect = 4.7
 Identities = 16/52 (30%), Positives = 25/52 (48%)
 Frame = +3

Query: 18  RVERFIVVEIRHKLIYLNYCNR**EIPTCESTISHFQDVKTIFDYQLLTTIL 173
           ++ RFIV+   + L  LN  NR   + T E  + H      +FD+ +L   L
Sbjct: 23  KLTRFIVISDCYSLDLLNVINRHEILRTSEGLMPHIVPRVEVFDFLILIDAL 74


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,344,375
Number of Sequences: 27780
Number of extensions: 210525
Number of successful extensions: 466
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 457
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 466
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 777938954
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)