Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0003_M11
         (448 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325124-1|ABD14138.1|  179|Apis mellifera complementary sex det...    21   4.6  
DQ325123-1|ABD14137.1|  179|Apis mellifera complementary sex det...    21   4.6  
DQ325122-1|ABD14136.1|  179|Apis mellifera complementary sex det...    21   4.6  
S78459-1|AAB34403.1|   50|Apis mellifera mast cell-degranulating...    21   6.1  
AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.     21   6.1  
AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter...    21   8.1  
AF393495-1|AAL60420.1|  136|Apis mellifera odorant binding prote...    21   8.1  
AF393492-1|AAL60417.1|  136|Apis mellifera odorant binding prote...    21   8.1  

>DQ325124-1|ABD14138.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.4 bits (43), Expect = 4.6
 Identities = 10/39 (25%), Positives = 18/39 (46%)
 Frame = +2

Query: 323 HQVCGENENILGYTDLHIKLLYSACSLQTYLRIDYTDKI 439
           H++     N   Y + + K LY     + Y  I+Y ++I
Sbjct: 79  HKIISSLSNNYNYNNNNYKKLYCNNYKKLYYNINYIEQI 117


>DQ325123-1|ABD14137.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.4 bits (43), Expect = 4.6
 Identities = 10/39 (25%), Positives = 18/39 (46%)
 Frame = +2

Query: 323 HQVCGENENILGYTDLHIKLLYSACSLQTYLRIDYTDKI 439
           H++     N   Y + + K LY     + Y  I+Y ++I
Sbjct: 79  HKIISSLSNNYNYNNNNYKKLYCNNYKKLYYNINYIEQI 117


>DQ325122-1|ABD14136.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.4 bits (43), Expect = 4.6
 Identities = 10/39 (25%), Positives = 18/39 (46%)
 Frame = +2

Query: 323 HQVCGENENILGYTDLHIKLLYSACSLQTYLRIDYTDKI 439
           H++     N   Y + + K LY     + Y  I+Y ++I
Sbjct: 79  HKIISSLSNNYNYNNNNYKKLYCNNYRKLYYNINYIEQI 117


>S78459-1|AAB34403.1|   50|Apis mellifera mast cell-degranulating
           peptide protein.
          Length = 50

 Score = 21.0 bits (42), Expect = 6.1
 Identities = 5/11 (45%), Positives = 9/11 (81%)
 Frame = +2

Query: 311 PDMCHQVCGEN 343
           P +C ++CG+N
Sbjct: 39  PHICRKICGKN 49


>AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.
          Length = 388

 Score = 21.0 bits (42), Expect = 6.1
 Identities = 10/32 (31%), Positives = 14/32 (43%)
 Frame = -2

Query: 333 QTWWHISGXXXXXXXXXXXVDRTNFNSKISFP 238
           +T W ISG            D +NF +  +FP
Sbjct: 164 RTRWSISGTVFDLINIHLFHDASNFIAMETFP 195


>AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter
           transporter-1A protein.
          Length = 203

 Score = 20.6 bits (41), Expect = 8.1
 Identities = 8/16 (50%), Positives = 9/16 (56%)
 Frame = -3

Query: 230 LNGTKHQSFCKFCIYN 183
           L  TKH +F K C  N
Sbjct: 123 LQMTKHHNFIKVCSVN 138


>AF393495-1|AAL60420.1|  136|Apis mellifera odorant binding protein
           ASP4 protein.
          Length = 136

 Score = 20.6 bits (41), Expect = 8.1
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = +3

Query: 342 MKIY*GTLTCTSNCCIVHA 398
           MKI   +L C   C +VHA
Sbjct: 1   MKITIVSLLCVIYCALVHA 19


>AF393492-1|AAL60417.1|  136|Apis mellifera odorant binding protein
           ASP4 protein.
          Length = 136

 Score = 20.6 bits (41), Expect = 8.1
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = +3

Query: 342 MKIY*GTLTCTSNCCIVHA 398
           MKI   +L C   C +VHA
Sbjct: 1   MKITIVSLLCVIYCALVHA 19


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 123,141
Number of Sequences: 438
Number of extensions: 2765
Number of successful extensions: 10
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 11697255
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)