Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0003_M10
(441 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1703.12 |ubp9||ubiquitin C-terminal hydrolase Ubp9|Schizosac... 32 0.045
SPAC1F7.10 |||hydantoin racemase family |Schizosaccharomyces pom... 28 0.55
SPAC8E11.05c |||conserved fungal protein|Schizosaccharomyces pom... 26 3.0
SPAC11E3.06 |map1||MADS-box transcription factor Map1|Schizosacc... 25 5.2
SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual 25 5.2
SPBPB7E8.02 |||PSP1 family protein|Schizosaccharomyces pombe|chr... 25 5.2
SPBC18E5.12c |mas2|SPBC23G7.02c|mitochondrial processing peptida... 25 6.8
SPBC3H7.03c |||2-oxoglutarate dehydrogenase |Schizosaccharomyces... 25 6.8
SPAC23D3.03c |||GTPase activating protein |Schizosaccharomyces p... 24 9.0
SPAC6F12.10c |ade3|min11|phosphoribosylformylglycinamidine synth... 24 9.0
SPCC1682.05c |||signal recognition particle subunit |Schizosacch... 24 9.0
>SPBC1703.12 |ubp9||ubiquitin C-terminal hydrolase
Ubp9|Schizosaccharomyces pombe|chr 2|||Manual
Length = 585
Score = 31.9 bits (69), Expect = 0.045
Identities = 17/53 (32%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
Frame = +2
Query: 236 VNTSQAGLDMDFRNTMVKGLRNCVVMGLKRQHLKTFKDLKCSVTMVG-EYTLC 391
V+ S G + ++ +V G NC G+K KDL CSV+ Y +C
Sbjct: 123 VDISNVGSESGTKHQIVVGESNCSAYGMKENIYTCLKDLYCSVSCCDCRYGIC 175
>SPAC1F7.10 |||hydantoin racemase family |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 238
Score = 28.3 bits (60), Expect = 0.55
Identities = 17/56 (30%), Positives = 30/56 (53%)
Frame = +2
Query: 101 APFITACHVSDTSCLVSSAQKAVPLLAAGIPSLGIQVLDPMFVVQVNTSQAGLDMD 268
A +TA + +V++ ++ PLL GI ++GI D +F +T A L++D
Sbjct: 101 ASILTALSLGRKVSVVTTTKRYEPLLTDGIHAMGIS--DSVFAGIASTGLAPLELD 154
>SPAC8E11.05c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 338
Score = 25.8 bits (54), Expect = 3.0
Identities = 13/29 (44%), Positives = 18/29 (62%)
Frame = +1
Query: 319 ETATSENV*GSKMLRHNGRRIHAMRKTSS 405
ET + V SK LR++GR+ + R TSS
Sbjct: 308 ETVVDDLVQHSKRLRNSGRKFLSRRSTSS 336
>SPAC11E3.06 |map1||MADS-box transcription factor
Map1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 398
Score = 25.0 bits (52), Expect = 5.2
Identities = 15/43 (34%), Positives = 19/43 (44%)
Frame = -1
Query: 435 LYFPFPSIGNTRSFPHSVYSPTIVTEHFRSLNVFRCCRFRPIT 307
++ P I + HSV SP +H RSLN R P T
Sbjct: 251 IFSPSTGIDYETTGQHSVNSPPSTYKHRRSLNKSFATRSEPQT 293
>SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1828
Score = 25.0 bits (52), Expect = 5.2
Identities = 22/68 (32%), Positives = 31/68 (45%), Gaps = 5/68 (7%)
Frame = +2
Query: 176 LAAGIPSLGIQVLDPMFVVQVNTSQAGLDMDFRNTMVKGLRNCVVMGLKRQHLKTFKDL- 352
L GI L + P FV + NT++ +NT LR + LKR +L+ K L
Sbjct: 1111 LTKGIKRLSLSS-QPTFVTESNTTEFDDWSILQNTAANLLRLISMFELKRGNLEIAKALM 1169
Query: 353 ----KCSV 364
KCS+
Sbjct: 1170 TDSTKCSI 1177
>SPBPB7E8.02 |||PSP1 family protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 749
Score = 25.0 bits (52), Expect = 5.2
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = -1
Query: 420 PSIGNTRSFPHSVYSPTI 367
PS+G+ R FP S +SP I
Sbjct: 433 PSLGSIRPFPISEHSPNI 450
>SPBC18E5.12c |mas2|SPBC23G7.02c|mitochondrial processing peptidase
complex alpha subunit Mas2|Schizosaccharomyces pombe|chr
2|||Manual
Length = 494
Score = 24.6 bits (51), Expect = 6.8
Identities = 11/18 (61%), Positives = 14/18 (77%), Gaps = 1/18 (5%)
Frame = +1
Query: 196 PGH-SGLGPYVRSTSEHE 246
PGH SGLG YV++ S +E
Sbjct: 63 PGHFSGLGVYVKAGSRYE 80
>SPBC3H7.03c |||2-oxoglutarate dehydrogenase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1009
Score = 24.6 bits (51), Expect = 6.8
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = -1
Query: 318 RPITTQFRRPLTMVFLKSMSR 256
R I QFR+PL + F KS+ R
Sbjct: 833 RNIHRQFRKPLVIFFSKSLLR 853
>SPAC23D3.03c |||GTPase activating protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 472
Score = 24.2 bits (50), Expect = 9.0
Identities = 13/37 (35%), Positives = 17/37 (45%)
Frame = +2
Query: 104 PFITACHVSDTSCLVSSAQKAVPLLAAGIPSLGIQVL 214
PF+ A + DTS L S Q + L P L +L
Sbjct: 343 PFLQAVYTQDTSSLKSFYQTFLDTLKKNEPELATHLL 379
>SPAC6F12.10c |ade3|min11|phosphoribosylformylglycinamidine synthase
Ade3 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1323
Score = 24.2 bits (50), Expect = 9.0
Identities = 8/21 (38%), Positives = 12/21 (57%)
Frame = +3
Query: 255 ASTWTLETPWSKVFGTVLLWV 317
AS W + PW ++F + WV
Sbjct: 1302 ASEWGVHGPWIRLFQSARKWV 1322
>SPCC1682.05c |||signal recognition particle subunit
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 597
Score = 24.2 bits (50), Expect = 9.0
Identities = 9/24 (37%), Positives = 16/24 (66%)
Frame = +1
Query: 346 GSKMLRHNGRRIHAMRKTSSITYR 417
G++ +++ RIH +RK+ IT R
Sbjct: 76 GNEYIKYLSHRIHGLRKSLHITQR 99
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,919,373
Number of Sequences: 5004
Number of extensions: 38999
Number of successful extensions: 101
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 98
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 101
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 160149590
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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