Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0003_M09
(335 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC9B6.10 |cdc37||Hsp90 co-chaperone Cdc37|Schizosaccharomyces ... 30 0.082
SPAC688.11 |end4|sla2|Huntingtin-interacting protein homolog|Sch... 26 1.3
SPBP23A10.13 |orc4|orp4|origin recognition complex subunit Orc4|... 26 1.8
SPAC23D3.01 |||PWWP domain protein|Schizosaccharomyces pombe|chr... 26 1.8
SPBC1861.02 |abp2||ARS binding protein Abp2|Schizosaccharomyces ... 25 4.1
SPAC2C4.07c |||ribonuclease II |Schizosaccharomyces pombe|chr 1|... 24 5.4
SPAC10F6.10 |||protein kinase, RIO family |Schizosaccharomyces p... 24 5.4
SPAPJ696.02 |||actin cortical patch component Lsb4 |Schizosaccha... 24 5.4
SPBC1711.05 |||nucleocytoplasmic transport chaperone Srp40 |Schi... 24 7.1
SPCC1281.05 |rsc7||RSC complex subunit Rsc7|Schizosaccharomyces ... 24 7.1
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ... 23 9.4
SPBC21D10.05c |ucp3|soc2|GTPase activating protein Ucp3 |Schizos... 23 9.4
SPCC23B6.04c |||sec14 cytosolic factor family|Schizosaccharomyce... 23 9.4
>SPBC9B6.10 |cdc37||Hsp90 co-chaperone Cdc37|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 466
Score = 30.3 bits (65), Expect = 0.082
Identities = 19/54 (35%), Positives = 26/54 (48%), Gaps = 3/54 (5%)
Frame = +2
Query: 92 STAVEKKGRGRPKANGTQSETKEV---KKRGRPPAAAPKTKESAKSSDDEQAPV 244
ST V+KK +PK T+ ET +V PP P KE A + + + PV
Sbjct: 180 STYVQKKEPEKPKKTKTKKETIQVIESLNNPTPPTDFPGAKEQASTGNAPKNPV 233
>SPAC688.11 |end4|sla2|Huntingtin-interacting protein
homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1092
Score = 26.2 bits (55), Expect = 1.3
Identities = 16/49 (32%), Positives = 25/49 (51%)
Frame = -3
Query: 150 SDCVPFAFGLPRPFFSTAVDPSSDILLNSKRAK*QRSQQNVTVIGQRAS 4
SD P A+ P P DP+ D L +++A Q +QQ + Q+A+
Sbjct: 308 SDITP-AYSEPEPIQDFWSDPTLDQQLAAQQAAQQAAQQQAELAAQQAA 355
>SPBP23A10.13 |orc4|orp4|origin recognition complex subunit
Orc4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 972
Score = 25.8 bits (54), Expect = 1.8
Identities = 14/36 (38%), Positives = 21/36 (58%), Gaps = 7/36 (19%)
Frame = +2
Query: 107 KKGRGRPKAN-------GTQSETKEVKKRGRPPAAA 193
K+GRGRP+ ++S++ +KRGRPP A
Sbjct: 339 KRGRGRPRLERPSGLPLDSKSQSLFKRKRGRPPKIA 374
Score = 24.6 bits (51), Expect = 4.1
Identities = 17/42 (40%), Positives = 23/42 (54%), Gaps = 6/42 (14%)
Frame = +2
Query: 98 AVEKKGRGR---PKANGTQSETKEVKKRGRPP---AAAPKTK 205
A ++GR R PK SE +KRGRPP +++P TK
Sbjct: 99 APRRRGRPRKYPPKPIDEGSEPIIKRKRGRPPKIKSSSPSTK 140
Score = 23.4 bits (48), Expect = 9.4
Identities = 12/29 (41%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
Frame = +2
Query: 74 KMSDDGSTAVEKKGRGR-PKANGTQSETK 157
K D+GS + K+ RGR PK + TK
Sbjct: 112 KPIDEGSEPIIKRKRGRPPKIKSSSPSTK 140
Score = 23.4 bits (48), Expect = 9.4
Identities = 12/28 (42%), Positives = 15/28 (53%), Gaps = 2/28 (7%)
Frame = +2
Query: 164 KKRGRPPAAAPKT--KESAKSSDDEQAP 241
+KRGRPP PK S ++ DE P
Sbjct: 311 RKRGRPPLNKPKILFGTSTENKIDENRP 338
>SPAC23D3.01 |||PWWP domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 407
Score = 25.8 bits (54), Expect = 1.8
Identities = 16/37 (43%), Positives = 23/37 (62%), Gaps = 4/37 (10%)
Frame = +2
Query: 104 EKKGRGRPKANGTQ-SETK---EVKKRGRPPAAAPKT 202
+KK + + KA G Q S TK +VKK+G+ A P+T
Sbjct: 19 QKKIKTKKKATGQQTSNTKNLRDVKKKGKQLAYVPRT 55
>SPBC1861.02 |abp2||ARS binding protein Abp2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 527
Score = 24.6 bits (51), Expect = 4.1
Identities = 12/40 (30%), Positives = 18/40 (45%)
Frame = +2
Query: 86 DGSTAVEKKGRGRPKANGTQSETKEVKKRGRPPAAAPKTK 205
DG + + + ++E +KRGRPP A K K
Sbjct: 303 DGLNDSWSRQTNQVETENVENEAGVPRKRGRPPGARNKIK 342
>SPAC2C4.07c |||ribonuclease II |Schizosaccharomyces pombe|chr
1|||Manual
Length = 927
Score = 24.2 bits (50), Expect = 5.4
Identities = 14/48 (29%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Frame = +2
Query: 95 TAVEKKGRGRPKANGTQSETKEVKKRGRPPAAAPKTKES-AKSSDDEQ 235
T + KG+ + +ETK K + +P A +KE +KSS ++
Sbjct: 71 TDTQLKGQDSNHKKASLTETKTEKAKVKPKAKKKNSKEKISKSSKQDE 118
>SPAC10F6.10 |||protein kinase, RIO family |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 521
Score = 24.2 bits (50), Expect = 5.4
Identities = 15/51 (29%), Positives = 25/51 (49%)
Frame = +2
Query: 65 EFNKMSDDGSTAVEKKGRGRPKANGTQSETKEVKKRGRPPAAAPKTKESAK 217
E + SD S+A K+G+G +A T E + KK+ + A + + K
Sbjct: 459 EEERTSDSKSSA--KQGKGNGRAKETPEEKRARKKKTKEDKAEKRKSKIPK 507
>SPAPJ696.02 |||actin cortical patch component Lsb4
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 430
Score = 24.2 bits (50), Expect = 5.4
Identities = 13/53 (24%), Positives = 22/53 (41%)
Frame = +2
Query: 80 SDDGSTAVEKKGRGRPKANGTQSETKEVKKRGRPPAAAPKTKESAKSSDDEQA 238
SD+ +V ++ S + E K RP A PK K+ + + +A
Sbjct: 326 SDEDEESVYSSDVSTESSSQFSSRSSEYSKPSRPTAPKPKFKQDSLGPNQARA 378
>SPBC1711.05 |||nucleocytoplasmic transport chaperone Srp40
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 451
Score = 23.8 bits (49), Expect = 7.1
Identities = 12/46 (26%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
Frame = +2
Query: 101 VEKKGRGRPKANGTQSETKEVKKRGRPPAAAPKTKES--AKSSDDE 232
V K + + + +++++ K+G PP A + E+ + SS DE
Sbjct: 66 VGKHKKTKESLEKSNDDSQKISKKGAPPEKAHSSSEASGSGSSSDE 111
>SPCC1281.05 |rsc7||RSC complex subunit Rsc7|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 390
Score = 23.8 bits (49), Expect = 7.1
Identities = 11/38 (28%), Positives = 16/38 (42%)
Frame = +2
Query: 119 GRPKANGTQSETKEVKKRGRPPAAAPKTKESAKSSDDE 232
G + T K+RGRPP + S+ D+E
Sbjct: 6 GSDASTPTNHTVSSKKRRGRPPKGSYAAYGSSDDDDEE 43
>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1420
Score = 23.4 bits (48), Expect = 9.4
Identities = 11/26 (42%), Positives = 13/26 (50%)
Frame = +2
Query: 161 VKKRGRPPAAAPKTKESAKSSDDEQA 238
V+K PPA PK+ K DD A
Sbjct: 914 VEKAPSPPATRPKSTTPQKFDDDAWA 939
>SPBC21D10.05c |ucp3|soc2|GTPase activating protein Ucp3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 601
Score = 23.4 bits (48), Expect = 9.4
Identities = 8/16 (50%), Positives = 13/16 (81%)
Frame = +2
Query: 176 RPPAAAPKTKESAKSS 223
+PP+ P+TK S++SS
Sbjct: 131 KPPSLPPRTKSSSQSS 146
>SPCC23B6.04c |||sec14 cytosolic factor family|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1008
Score = 23.4 bits (48), Expect = 9.4
Identities = 14/39 (35%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
Frame = +2
Query: 2 HEALWPITVTFCCERCYFALFEFNKM-SDDGSTAVEKKG 115
HE WP V C R L ++ KM S G++ + KG
Sbjct: 830 HEKYWPQLVELCKSRRLGILEKWRKMGSKIGTSEWDLKG 868
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,008,981
Number of Sequences: 5004
Number of extensions: 13895
Number of successful extensions: 63
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 59
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 63
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 95984434
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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