Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0003_M08
(433 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC646.02 |cwf11||complexed with Cdc5 protein Cwf11 |Schizosacc... 61 8e-11
SPCC1739.03 |hrr1||Helicase Required for RNAi-mediated heterochr... 40 2e-04
SPAC16C9.06c |upf1||ATP-dependent RNA helicase Upf1|Schizosaccha... 39 3e-04
SPBC16D10.04c |dna2||DNA replication endonuclease-helicase Dna2|... 34 0.011
SPBC29A10.10c |||tRNA-splicing endonuclease positive effector |S... 32 0.033
SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase Sen1|... 30 0.17
SPBC12C2.14c |||dubious|Schizosaccharomyces pombe|chr 2|||Manual 27 0.93
SPBC887.14c |pfh1|pif1|pif1 helicase homolog Pfh1|Schizosaccharo... 27 1.2
SPCC162.07 |ent1||epsin|Schizosaccharomyces pombe|chr 3|||Manual 26 2.8
SPAC5H10.04 |||NADPH dehydrogenase |Schizosaccharomyces pombe|ch... 25 5.0
SPAC19A8.02 |||transcriptional coactivator |Schizosaccharomyces ... 25 5.0
SPCC737.03c |||conserved eukaryotic protein|Schizosaccharomyces ... 24 8.7
SPAC9G1.07 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||... 24 8.7
SPCC1393.05 |||sequence orphan|Schizosaccharomyces pombe|chr 3||... 24 8.7
>SPBC646.02 |cwf11||complexed with Cdc5 protein Cwf11
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1284
Score = 60.9 bits (141), Expect = 8e-11
Identities = 40/101 (39%), Positives = 51/101 (50%), Gaps = 2/101 (1%)
Frame = +1
Query: 136 SLFTRMVRLGVPYVELDAQGRARPSICNLYRWRYLALGDLGHVTRLPEYHA--ANAGLRH 309
SLF R+ L ++L+ Q R SI +L Y D+ V P N+G H
Sbjct: 1027 SLFKRLRYLKSRIIDLNTQYNVRESISSLCSSIYPL--DIKTVDSSPNKRLDYGNSGFAH 1084
Query: 310 DFQLINVDDFNGAGETEPRPYLYQNLAEPEYVVAVFMYMRL 432
+ Q INV F G+ ETEP QNL E EY VA+F YMR+
Sbjct: 1085 EVQFINVGAFKGSQETEPVSGYKQNLGEAEYAVALFQYMRM 1125
>SPCC1739.03 |hrr1||Helicase Required for RNAi-mediated
heterochromatin assembly Hrr1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1015
Score = 39.5 bits (88), Expect = 2e-04
Identities = 25/70 (35%), Positives = 33/70 (47%), Gaps = 1/70 (1%)
Frame = +1
Query: 46 LKRWIMIGDHHQLPPVVKNMAF-QKYCNMEQSLFTRMVRLGVPYVELDAQGRARPSICNL 222
L++ ++IGDH QL P A Q N+ S+F R+V + Y L Q R P I L
Sbjct: 729 LEQLVLIGDHKQLRPGCSTYALRQDPFNLSISMFERLVENDMEYTRLTMQRRMHPQIRRL 788
Query: 223 YRWRYLALGD 252
Y L D
Sbjct: 789 VSSVYEDLSD 798
>SPAC16C9.06c |upf1||ATP-dependent RNA helicase
Upf1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 925
Score = 39.1 bits (87), Expect = 3e-04
Identities = 21/55 (38%), Positives = 30/55 (54%)
Frame = +1
Query: 49 KRWIMIGDHHQLPPVVKNMAFQKYCNMEQSLFTRMVRLGVPYVELDAQGRARPSI 213
K+ +++GDH QL PVV N ++ QSLF R++ LG L Q R P +
Sbjct: 583 KQVVLVGDHQQLGPVVMNKKV-ALASLSQSLFERLIILGNSPFRLVVQYRMHPCL 636
>SPBC16D10.04c |dna2||DNA replication endonuclease-helicase
Dna2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1398
Score = 33.9 bits (74), Expect = 0.011
Identities = 11/23 (47%), Positives = 19/23 (82%)
Frame = +1
Query: 49 KRWIMIGDHHQLPPVVKNMAFQK 117
++++++GDH+QLPP+VKN K
Sbjct: 1084 EKFVLVGDHYQLPPLVKNSRTSK 1106
>SPBC29A10.10c |||tRNA-splicing endonuclease positive effector
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1944
Score = 32.3 bits (70), Expect = 0.033
Identities = 27/103 (26%), Positives = 43/103 (41%), Gaps = 6/103 (5%)
Frame = +1
Query: 58 IMIGDHHQLPPVVKNMAFQKYCNMEQSLFTRMVRL-GVPYVELDAQGRARPSICN----- 219
+M+GD +QLPP V + K+ QSL+ RM + L Q R P I
Sbjct: 1538 VMVGDPNQLPPTVLSKTSAKF-GYSQSLYVRMFKQHNESACLLSIQYRMNPEISRFPSKF 1596
Query: 220 LYRWRYLALGDLGHVTRLPEYHAANAGLRHDFQLINVDDFNGA 348
Y + L ++ VT P + G+ F + + F+ +
Sbjct: 1597 FYNSKLLDGPNMSAVTSRPWHEDPQLGIYRFFNVHGTEAFSNS 1639
>SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase
Sen1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1687
Score = 29.9 bits (64), Expect = 0.17
Identities = 15/35 (42%), Positives = 21/35 (60%)
Frame = +1
Query: 49 KRWIMIGDHHQLPPVVKNMAFQKYCNMEQSLFTRM 153
K+ I++GD +QLPP V + N QSLF R+
Sbjct: 1397 KKCILVGDPNQLPPTVLSKKAAS-LNYSQSLFVRI 1430
>SPBC12C2.14c |||dubious|Schizosaccharomyces pombe|chr 2|||Manual
Length = 111
Score = 27.5 bits (58), Expect = 0.93
Identities = 18/44 (40%), Positives = 25/44 (56%)
Frame = -1
Query: 175 RRARLASPFS*IRTVPCYSTFGKPCSSPQAVAGDGRLSLSSVSV 44
R R A P + + T+ +STFG PCS GD R++LS S+
Sbjct: 20 RFQRSALPLTIVYTI--WSTFGSPCS------GDQRVTLSITSI 55
>SPBC887.14c |pfh1|pif1|pif1 helicase homolog
Pfh1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 805
Score = 27.1 bits (57), Expect = 1.2
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = +1
Query: 58 IMIGDHHQLPPVVKNMAFQKYCNMEQS 138
++ GD QLPPV +N K+C Q+
Sbjct: 450 VLTGDFFQLPPVPENGKESKFCFESQT 476
>SPCC162.07 |ent1||epsin|Schizosaccharomyces pombe|chr 3|||Manual
Length = 706
Score = 25.8 bits (54), Expect = 2.8
Identities = 17/58 (29%), Positives = 27/58 (46%), Gaps = 2/58 (3%)
Frame = -1
Query: 187 RPTPRRARLASPFS*IRTVPCYSTFGKPCSSPQAVA--GDGRLSLSSVSVSTDRPVGS 20
R P + +PF+ +P ST P + P GD R S + ++ST P+G+
Sbjct: 556 RLEPTKTGSNNPFAQFSNLPSQST--APATKPMKPVRTGDDRFSNIAQAISTGNPMGT 611
>SPAC5H10.04 |||NADPH dehydrogenase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 382
Score = 25.0 bits (52), Expect = 5.0
Identities = 9/19 (47%), Positives = 12/19 (63%)
Frame = -3
Query: 140 KDCSMLQYFWKAMFFTTGG 84
++ S LQ +WK F T GG
Sbjct: 295 QNTSFLQKYWKGPFITAGG 313
>SPAC19A8.02 |||transcriptional coactivator |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1213
Score = 25.0 bits (52), Expect = 5.0
Identities = 9/19 (47%), Positives = 12/19 (63%)
Frame = +2
Query: 359 NPGHIYIRIWLNRSMWLPF 415
N H+YI WL+ S LP+
Sbjct: 862 NDYHLYIMTWLHHSWTLPY 880
>SPCC737.03c |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 615
Score = 24.2 bits (50), Expect = 8.7
Identities = 12/31 (38%), Positives = 15/31 (48%)
Frame = -1
Query: 196 DPERPTPRRARLASPFS*IRTVPCYSTFGKP 104
D PTP + + PF IR P S+F P
Sbjct: 65 DYRPPTPTQDKGVGPFYAIRDFPSSSSFQSP 95
>SPAC9G1.07 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 418
Score = 24.2 bits (50), Expect = 8.7
Identities = 8/24 (33%), Positives = 14/24 (58%)
Frame = +1
Query: 325 NVDDFNGAGETEPRPYLYQNLAEP 396
+VDD + + EP ++QN + P
Sbjct: 339 SVDDVSEESQVEPNTLIFQNFSSP 362
>SPCC1393.05 |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 956
Score = 24.2 bits (50), Expect = 8.7
Identities = 10/30 (33%), Positives = 17/30 (56%)
Frame = +1
Query: 313 FQLINVDDFNGAGETEPRPYLYQNLAEPEY 402
FQL+N ++FN + L QN A+ ++
Sbjct: 500 FQLVNSNEFNEVNANDVHKSLRQNCAKLDF 529
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,900,354
Number of Sequences: 5004
Number of extensions: 36105
Number of successful extensions: 84
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 84
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 84
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 154067960
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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