Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0003_M08
(433 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL132853-9|CAB60444.4| 1467|Caenorhabditis elegans Hypothetical ... 209 6e-55
AF074017-1|AAC26789.1| 1069|Caenorhabditis elegans nonsense-medi... 37 0.005
AC025721-8|AAK29903.2| 1069|Caenorhabditis elegans Suppressor wi... 37 0.005
Z70038-1|CAA93884.1| 2219|Caenorhabditis elegans Hypothetical pr... 33 0.067
AF016440-6|AAN84798.1| 525|Caenorhabditis elegans Hypothetical ... 31 0.27
AF016440-5|AAB65904.2| 535|Caenorhabditis elegans Hypothetical ... 31 0.27
AF067216-12|AAL02459.1| 403|Caenorhabditis elegans Hypothetical... 27 5.8
AF067216-11|AAL02458.1| 707|Caenorhabditis elegans Hypothetical... 27 5.8
AF039050-10|AAC47933.2| 362|Caenorhabditis elegans Seven tm rec... 27 7.7
>AL132853-9|CAB60444.4| 1467|Caenorhabditis elegans Hypothetical
protein Y80D3A.2 protein.
Length = 1467
Score = 209 bits (511), Expect = 6e-55
Identities = 94/141 (66%), Positives = 109/141 (77%)
Frame = +1
Query: 10 LLLQNPQDGRSRLKRWIMIGDHHQLPPVVKNMAFQKYCNMEQSLFTRMVRLGVPYVELDA 189
LLLQNPQDG +RLKRWIMIGDHHQLPPVV+N AFQKY NMEQSLF R+VRL VP V+LD
Sbjct: 1078 LLLQNPQDGHNRLKRWIMIGDHHQLPPVVQNQAFQKYSNMEQSLFARLVRLSVPNVQLDR 1137
Query: 190 QGRARPSICNLYRWRYLALGDLGHVTRLPEYHAANAGLRHDFQLINVDDFNGAGETEPRP 369
QGRAR I LY+WRY LG+L HV LP++ ANAG FQ I++ DFNG GET+P P
Sbjct: 1138 QGRARAQIAELYQWRYNGLGNLPHVDGLPQFQNANAGFAFPFQFIDIPDFNGHGETQPSP 1197
Query: 370 YLYQNLAEPEYVVAVFMYMRL 432
+ YQNL E EY A++ YMR+
Sbjct: 1198 HFYQNLGEAEYACALYTYMRI 1218
Score = 27.1 bits (57), Expect = 5.8
Identities = 17/45 (37%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
Frame = +3
Query: 24 PTGRSVETETLDNDRRPSPATACGEEHGFP--KVL*HGTVLIHEN 152
P VET TL +RRP+ T E+ FP KV+ ++ +EN
Sbjct: 409 PHQHLVETITLHCERRPNQLTQLNEKPLFPTEKVIWDENIIPYEN 453
>AF074017-1|AAC26789.1| 1069|Caenorhabditis elegans
nonsense-mediated mRNA decay trans-acting factor
protein.
Length = 1069
Score = 37.1 bits (82), Expect = 0.005
Identities = 22/56 (39%), Positives = 31/56 (55%), Gaps = 2/56 (3%)
Frame = +1
Query: 46 LKRWIMIGDHHQLPPVV--KNMAFQKYCNMEQSLFTRMVRLGVPYVELDAQGRARP 207
+++ +++GDH QL PVV K A + QSLF R+V LG+ L Q R P
Sbjct: 628 VRQLVLVGDHCQLGPVVICKKAAI---AGLSQSLFERLVLLGIRPFRLQVQYRMHP 680
>AC025721-8|AAK29903.2| 1069|Caenorhabditis elegans Suppressor with
morphological effecton genitalia protein 2 protein.
Length = 1069
Score = 37.1 bits (82), Expect = 0.005
Identities = 22/56 (39%), Positives = 31/56 (55%), Gaps = 2/56 (3%)
Frame = +1
Query: 46 LKRWIMIGDHHQLPPVV--KNMAFQKYCNMEQSLFTRMVRLGVPYVELDAQGRARP 207
+++ +++GDH QL PVV K A + QSLF R+V LG+ L Q R P
Sbjct: 628 VRQLVLVGDHCQLGPVVICKKAAI---AGLSQSLFERLVLLGIRPFRLQVQYRMHP 680
>Z70038-1|CAA93884.1| 2219|Caenorhabditis elegans Hypothetical protein
ZK1067.2 protein.
Length = 2219
Score = 33.5 bits (73), Expect = 0.067
Identities = 19/58 (32%), Positives = 29/58 (50%)
Frame = +1
Query: 40 SRLKRWIMIGDHHQLPPVVKNMAFQKYCNMEQSLFTRMVRLGVPYVELDAQGRARPSI 213
S ++ +MIGDH QL P + S+F R+V G+P+ +L Q R +I
Sbjct: 1252 STVEHVVMIGDHKQLRPNPAVHELGVAYGLRISMFERLVERGLPFSQLRQQHRMNLTI 1309
>AF016440-6|AAN84798.1| 525|Caenorhabditis elegans Hypothetical
protein F29G9.2b protein.
Length = 525
Score = 31.5 bits (68), Expect = 0.27
Identities = 27/94 (28%), Positives = 44/94 (46%)
Frame = -3
Query: 398 SGSARF*YKYGLGSVSPAPLKSSTLMSWKSCRRPALAAWYSGKRVT*PRSPSARYRQRYR 219
SGS+ Y + P+ SST S + +++ S + T PRSP RY
Sbjct: 5 SGSSASTVHYAKPVLRHVPMPSSTTPSSIGSSSSSSSSYASSTKQTPPRSPVIRY-PTVV 63
Query: 218 LQILGLARP*ASNST*GTPSLTILVNKDCSMLQY 117
+ +A P +S + GTPS + V++ + +QY
Sbjct: 64 VSKNSIATPSSSLTPQGTPSYAVPVSR--NQMQY 95
>AF016440-5|AAB65904.2| 535|Caenorhabditis elegans Hypothetical
protein F29G9.2a protein.
Length = 535
Score = 31.5 bits (68), Expect = 0.27
Identities = 27/94 (28%), Positives = 44/94 (46%)
Frame = -3
Query: 398 SGSARF*YKYGLGSVSPAPLKSSTLMSWKSCRRPALAAWYSGKRVT*PRSPSARYRQRYR 219
SGS+ Y + P+ SST S + +++ S + T PRSP RY
Sbjct: 15 SGSSASTVHYAKPVLRHVPMPSSTTPSSIGSSSSSSSSYASSTKQTPPRSPVIRY-PTVV 73
Query: 218 LQILGLARP*ASNST*GTPSLTILVNKDCSMLQY 117
+ +A P +S + GTPS + V++ + +QY
Sbjct: 74 VSKNSIATPSSSLTPQGTPSYAVPVSR--NQMQY 105
>AF067216-12|AAL02459.1| 403|Caenorhabditis elegans Hypothetical
protein C35E7.2b protein.
Length = 403
Score = 27.1 bits (57), Expect = 5.8
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = +1
Query: 109 FQKYCNMEQSLFTRMVRLGVPYVELDA 189
FQK CNME +LF +++ P + A
Sbjct: 139 FQKLCNMEDNLFKQIIDFEKPKEQFTA 165
>AF067216-11|AAL02458.1| 707|Caenorhabditis elegans Hypothetical
protein C35E7.2a protein.
Length = 707
Score = 27.1 bits (57), Expect = 5.8
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = +1
Query: 109 FQKYCNMEQSLFTRMVRLGVPYVELDA 189
FQK CNME +LF +++ P + A
Sbjct: 443 FQKLCNMEDNLFKQIIDFEKPKEQFTA 469
>AF039050-10|AAC47933.2| 362|Caenorhabditis elegans Seven tm
receptor protein 82 protein.
Length = 362
Score = 26.6 bits (56), Expect = 7.7
Identities = 18/66 (27%), Positives = 29/66 (43%), Gaps = 1/66 (1%)
Frame = +1
Query: 46 LKRWIMIGDHHQLPPVVKNMAFQKY-CNMEQSLFTRMVRLGVPYVELDAQGRARPSICNL 222
L W + G+H P ++ F+K+ N+ Q FT V Y + G+ P+ N+
Sbjct: 148 LVAWFVYGNHGVYPKELEEEMFEKFDRNISQMAFTL-----VSYAKQGENGKVLPNYLNI 202
Query: 223 YRWRYL 240
YL
Sbjct: 203 AMIVYL 208
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,841,876
Number of Sequences: 27780
Number of extensions: 216945
Number of successful extensions: 604
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 582
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 601
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 724655464
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -