Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0003_M08
         (433 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    24   0.84 
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    24   0.84 
U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive o...    22   2.6  
AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin ...    22   2.6  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    21   4.5  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          21   4.5  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   5.9  
DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    21   7.8  
DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.    21   7.8  
AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    21   7.8  

>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 23.8 bits (49), Expect = 0.84
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = -2

Query: 240  QVPPTIQIADTRSSTTLSVQLH 175
            QVPP+  +    SST+ S+ LH
Sbjct: 1402 QVPPSAPVLYVTSSTSSSILLH 1423


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 23.8 bits (49), Expect = 0.84
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = -2

Query: 240  QVPPTIQIADTRSSTTLSVQLH 175
            QVPP+  +    SST+ S+ LH
Sbjct: 1398 QVPPSAPVLYVTSSTSSSILLH 1419


>U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive
           opsin protein.
          Length = 377

 Score = 22.2 bits (45), Expect = 2.6
 Identities = 9/21 (42%), Positives = 11/21 (52%)
 Frame = +2

Query: 200 LDLVSAICIVGGTWHWVTSVT 262
           L+   A  I+  TW WVT  T
Sbjct: 166 LNSKQAAVIIAFTWFWVTPFT 186


>AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin
           protein.
          Length = 377

 Score = 22.2 bits (45), Expect = 2.6
 Identities = 9/21 (42%), Positives = 11/21 (52%)
 Frame = +2

Query: 200 LDLVSAICIVGGTWHWVTSVT 262
           L+   A  I+  TW WVT  T
Sbjct: 166 LNSKQAAVIIAFTWFWVTPFT 186


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 21.4 bits (43), Expect = 4.5
 Identities = 7/22 (31%), Positives = 10/22 (45%)
 Frame = +3

Query: 42  ETETLDNDRRPSPATACGEEHG 107
           E       ++PSP T   + HG
Sbjct: 353 EEREAQKSQKPSPVTGASKSHG 374


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 21.4 bits (43), Expect = 4.5
 Identities = 8/28 (28%), Positives = 15/28 (53%)
 Frame = +3

Query: 24  PTGRSVETETLDNDRRPSPATACGEEHG 107
           P+G SV +++ +N+ R     +    HG
Sbjct: 380 PSGSSVHSDSGENNSRGHSGQSSSHHHG 407


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.0 bits (42), Expect = 5.9
 Identities = 11/35 (31%), Positives = 17/35 (48%)
 Frame = -1

Query: 124 YSTFGKPCSSPQAVAGDGRLSLSSVSVSTDRPVGS 20
           Y T+   C +   + G+ RLS +   +    PVGS
Sbjct: 176 YKTY--QCRTKHRLTGETRLSATKGRLVITEPVGS 208


>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 20.6 bits (41), Expect = 7.8
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = +3

Query: 192 GSC*T*YLQSVSLAVPG 242
           GSC   Y+QS++L + G
Sbjct: 181 GSCKCIYVQSINLCMAG 197


>DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.
          Length = 471

 Score = 20.6 bits (41), Expect = 7.8
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = -2

Query: 405 HILRFSQILI*IWPGFGF 352
           H+L +  + + IW GFGF
Sbjct: 52  HLL-YQDVHVMIWIGFGF 68


>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 20.6 bits (41), Expect = 7.8
 Identities = 7/11 (63%), Positives = 9/11 (81%)
 Frame = +3

Query: 54  LDNDRRPSPAT 86
           +DN RRP+P T
Sbjct: 512 VDNRRRPNPGT 522


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 132,842
Number of Sequences: 438
Number of extensions: 2554
Number of successful extensions: 15
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 11244597
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)