Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0003_M07
         (411 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC29A3.04 |rpl8||60S ribosomal protein L7a |Schizosaccharomyce...   116   2e-27
SPAC22E12.04 |ccs1|pccs, pccs|metallochaperone Ccs1 |Schizosacch...    27   0.86 
SPAC6F12.12 |par2|pbp2|protein phosphatase regulatory subunit Pa...    26   2.6  
SPBC28E12.03 |rga4||GTPase activating protein Rga4|Schizosacchar...    26   2.6  
SPAC57A10.08c |||esterase/lipase |Schizosaccharomyces pombe|chr ...    25   3.5  
SPAC1B1.04c |||poly|Schizosaccharomyces pombe|chr 1|||Manual           25   6.1  
SPBC17A3.06 |||phosphoprotein phosphatase|Schizosaccharomyces po...    25   6.1  
SPAC1851.03 |ckb1||CK2 family regulatory subunit |Schizosaccharo...    24   8.0  
SPAC343.09 |ubx3|mug39|UBX domain protein Ubx3|Schizosaccharomyc...    24   8.0  

>SPBC29A3.04 |rpl8||60S ribosomal protein L7a |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 259

 Score =  116 bits (278), Expect = 2e-27
 Identities = 52/82 (63%), Positives = 64/82 (78%)
 Frame = +3

Query: 165 RTIVNPLFEKRTKNFAIGQDIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFT 344
           +T  NPLF  R ++F IGQDIQP RDLSRFV+WP+YIR+QR++ +L  RLKVPP I QF 
Sbjct: 20  KTTKNPLFVSRPRSFGIGQDIQPKRDLSRFVKWPEYIRLQRRRKILNLRLKVPPAIAQFQ 79

Query: 345 QTLDKTTAKGLFKILEKYWPET 410
           +TLDK TA  +FK+L KY PET
Sbjct: 80  KTLDKNTATQVFKLLNKYRPET 101


>SPAC22E12.04 |ccs1|pccs, pccs|metallochaperone Ccs1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 297

 Score = 27.5 bits (58), Expect = 0.86
 Identities = 15/49 (30%), Positives = 21/49 (42%)
 Frame = +2

Query: 65  ELKSIQDGXXXXXXXDREKSSGRSTCGEES*RPKNDCKPSIREENKELC 211
           ELKS+ +G       D   S   S C +E     +  KPS   + K+ C
Sbjct: 215 ELKSVNEGSSCCSKKDSSPSEKPSCCSQEKKSCCSSKKPSCCSQEKKGC 263


>SPAC6F12.12 |par2|pbp2|protein phosphatase regulatory subunit
           Par2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 627

 Score = 25.8 bits (54), Expect = 2.6
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = +3

Query: 291 KAVLQRRLKVPPPINQFTQTLDKTTAKGLFKILE 392
           KAVL   LK  P IN F + L     + +F++LE
Sbjct: 463 KAVLTGILKYWPRINSFKELLFLNEIEDIFEVLE 496


>SPBC28E12.03 |rga4||GTPase activating protein
           Rga4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 933

 Score = 25.8 bits (54), Expect = 2.6
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = +1

Query: 304 SVVSKCRRQSTSSPRH*IKPQPKVCSRSWRNTG 402
           S V   R Q+TSSP + ++PQ KV +  +   G
Sbjct: 182 SSVLSGRMQNTSSPTNSLRPQLKVQTNGYETPG 214


>SPAC57A10.08c |||esterase/lipase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 364

 Score = 25.4 bits (53), Expect = 3.5
 Identities = 13/29 (44%), Positives = 19/29 (65%), Gaps = 4/29 (13%)
 Frame = +3

Query: 333 NQFTQTLDKTTAKGL----FKILEKYWPE 407
           NQ   ++D+ T KGL    +K+LEK +PE
Sbjct: 145 NQRIGSVDQLTTKGLSKLTYKVLEKLFPE 173


>SPAC1B1.04c |||poly|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 604

 Score = 24.6 bits (51), Expect = 6.1
 Identities = 8/23 (34%), Positives = 16/23 (69%)
 Frame = +3

Query: 177 NPLFEKRTKNFAIGQDIQPTRDL 245
           +P+F KRT +F   Q ++ T+++
Sbjct: 315 SPVFRKRTSSFYFSQPLKATKEV 337


>SPBC17A3.06 |||phosphoprotein phosphatase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 330

 Score = 24.6 bits (51), Expect = 6.1
 Identities = 11/33 (33%), Positives = 17/33 (51%)
 Frame = -3

Query: 301 NTAF*RWMRIYFGHRTKRDRSLVGWMSWPIAKF 203
           N  F R +R+YF    + DRSL  +  W   ++
Sbjct: 171 NANFLRQLRVYFECNYQLDRSLRPYRQWLFRRY 203


>SPAC1851.03 |ckb1||CK2 family regulatory subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 231

 Score = 24.2 bits (50), Expect = 8.0
 Identities = 9/12 (75%), Positives = 12/12 (100%)
 Frame = +3

Query: 363 TAKGLFKILEKY 398
           TA+GL+K+LEKY
Sbjct: 94  TAQGLYKMLEKY 105


>SPAC343.09 |ubx3|mug39|UBX domain protein Ubx3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 410

 Score = 24.2 bits (50), Expect = 8.0
 Identities = 14/41 (34%), Positives = 20/41 (48%)
 Frame = +1

Query: 289 KRLCYSVVSKCRRQSTSSPRH*IKPQPKVCSRSWRNTGQKL 411
           K+L   ++ K R Q T SP       P   + SW + GQ+L
Sbjct: 140 KQLVRDILEKAR-QHTISPLDEQDSGPSSLASSWASVGQRL 179


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,652,089
Number of Sequences: 5004
Number of extensions: 30593
Number of successful extensions: 83
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 82
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 83
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 142254980
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)