Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0003_M07
(411 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC006729-4|AAK84600.1| 265|Caenorhabditis elegans Ribosomal pro... 122 1e-28
AC006729-3|AAM15612.1| 245|Caenorhabditis elegans Ribosomal pro... 122 1e-28
AC084159-4|AAK39366.1| 234|Caenorhabditis elegans Hypothetical ... 121 2e-28
AC084159-5|AAM69075.1| 199|Caenorhabditis elegans Hypothetical ... 104 3e-23
AY818713-1|AAX35669.1| 691|Caenorhabditis elegans LIN-65S protein. 31 0.33
AY818712-1|AAX35668.1| 728|Caenorhabditis elegans LIN-65L protein. 31 0.33
AC025726-22|AAN73851.2| 512|Caenorhabditis elegans Abnormal cel... 31 0.33
AC025726-21|AAK73935.3| 728|Caenorhabditis elegans Abnormal cel... 31 0.33
>AC006729-4|AAK84600.1| 265|Caenorhabditis elegans Ribosomal
protein, large subunitprotein 7A, isoform a protein.
Length = 265
Score = 122 bits (293), Expect = 1e-28
Identities = 52/82 (63%), Positives = 67/82 (81%)
Frame = +3
Query: 165 RTIVNPLFEKRTKNFAIGQDIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFT 344
+ + NPLFEKR +NF IGQDIQP +D++RFV+WPKYIR+QRQ A+LQ+RLKVPP INQF
Sbjct: 26 KEVKNPLFEKRARNFNIGQDIQPKKDVTRFVKWPKYIRLQRQSAILQKRLKVPPTINQFR 85
Query: 345 QTLDKTTAKGLFKILEKYWPET 410
LD +A+ FK+L+KY PE+
Sbjct: 86 TALDSQSARQAFKLLDKYRPES 107
>AC006729-3|AAM15612.1| 245|Caenorhabditis elegans Ribosomal
protein, large subunitprotein 7A, isoform c protein.
Length = 245
Score = 122 bits (293), Expect = 1e-28
Identities = 52/82 (63%), Positives = 67/82 (81%)
Frame = +3
Query: 165 RTIVNPLFEKRTKNFAIGQDIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFT 344
+ + NPLFEKR +NF IGQDIQP +D++RFV+WPKYIR+QRQ A+LQ+RLKVPP INQF
Sbjct: 26 KEVKNPLFEKRARNFNIGQDIQPKKDVTRFVKWPKYIRLQRQSAILQKRLKVPPTINQFR 85
Query: 345 QTLDKTTAKGLFKILEKYWPET 410
LD +A+ FK+L+KY PE+
Sbjct: 86 TALDSQSARQAFKLLDKYRPES 107
>AC084159-4|AAK39366.1| 234|Caenorhabditis elegans Hypothetical
protein Y73B3A.18a protein.
Length = 234
Score = 121 bits (292), Expect = 2e-28
Identities = 52/82 (63%), Positives = 67/82 (81%)
Frame = +3
Query: 165 RTIVNPLFEKRTKNFAIGQDIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFT 344
+ + NPLFEKR +NF IGQDIQP +D++RFV+WPKYIR+QRQ A+LQ+RLKVPP INQF
Sbjct: 129 KEVKNPLFEKRARNFNIGQDIQPKKDVTRFVKWPKYIRLQRQSAILQKRLKVPPTINQFR 188
Query: 345 QTLDKTTAKGLFKILEKYWPET 410
LD +A+ FK+L+KY PE+
Sbjct: 189 TALDSHSARQAFKLLDKYRPES 210
>AC084159-5|AAM69075.1| 199|Caenorhabditis elegans Hypothetical
protein Y73B3A.18b protein.
Length = 199
Score = 104 bits (249), Expect = 3e-23
Identities = 44/64 (68%), Positives = 54/64 (84%)
Frame = +3
Query: 165 RTIVNPLFEKRTKNFAIGQDIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFT 344
+ + NPLFEKR +NF IGQDIQP +D++RFV+WPKYIR+QRQ A+LQ+RLKVPP INQF
Sbjct: 129 KEVKNPLFEKRARNFNIGQDIQPKKDVTRFVKWPKYIRLQRQSAILQKRLKVPPTINQFR 188
Query: 345 QTLD 356
LD
Sbjct: 189 TALD 192
>AY818713-1|AAX35669.1| 691|Caenorhabditis elegans LIN-65S protein.
Length = 691
Score = 31.1 bits (67), Expect = 0.33
Identities = 16/61 (26%), Positives = 30/61 (49%)
Frame = +2
Query: 218 PGHPANQRSIPFRAMAEIYSHPASKGCVTASSQSAAANQPVHPDIR*NHSQRSVQDLGEI 397
P A++ S P + E+ P S G AS+Q++ A+ P++ + + QD+ +
Sbjct: 64 PAQEASEASAPDQEAPEVQDVPDSSGAPDASAQASEASDASAPEVPGSTEAQDAQDVPDS 123
Query: 398 L 400
L
Sbjct: 124 L 124
>AY818712-1|AAX35668.1| 728|Caenorhabditis elegans LIN-65L protein.
Length = 728
Score = 31.1 bits (67), Expect = 0.33
Identities = 16/61 (26%), Positives = 30/61 (49%)
Frame = +2
Query: 218 PGHPANQRSIPFRAMAEIYSHPASKGCVTASSQSAAANQPVHPDIR*NHSQRSVQDLGEI 397
P A++ S P + E+ P S G AS+Q++ A+ P++ + + QD+ +
Sbjct: 101 PAQEASEASAPDQEAPEVQDVPDSSGAPDASAQASEASDASAPEVPGSTEAQDAQDVPDS 160
Query: 398 L 400
L
Sbjct: 161 L 161
>AC025726-22|AAN73851.2| 512|Caenorhabditis elegans Abnormal cell
lineage protein 65,isoform b protein.
Length = 512
Score = 31.1 bits (67), Expect = 0.33
Identities = 16/61 (26%), Positives = 30/61 (49%)
Frame = +2
Query: 218 PGHPANQRSIPFRAMAEIYSHPASKGCVTASSQSAAANQPVHPDIR*NHSQRSVQDLGEI 397
P A++ S P + E+ P S G AS+Q++ A+ P++ + + QD+ +
Sbjct: 101 PAQEASEASAPDQEAPEVQDVPDSSGAPDASAQASEASDASAPEVPGSTEAQDAQDVPDS 160
Query: 398 L 400
L
Sbjct: 161 L 161
>AC025726-21|AAK73935.3| 728|Caenorhabditis elegans Abnormal cell
lineage protein 65,isoform a protein.
Length = 728
Score = 31.1 bits (67), Expect = 0.33
Identities = 16/61 (26%), Positives = 30/61 (49%)
Frame = +2
Query: 218 PGHPANQRSIPFRAMAEIYSHPASKGCVTASSQSAAANQPVHPDIR*NHSQRSVQDLGEI 397
P A++ S P + E+ P S G AS+Q++ A+ P++ + + QD+ +
Sbjct: 101 PAQEASEASAPDQEAPEVQDVPDSSGAPDASAQASEASDASAPEVPGSTEAQDAQDVPDS 160
Query: 398 L 400
L
Sbjct: 161 L 161
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,110,654
Number of Sequences: 27780
Number of extensions: 171312
Number of successful extensions: 427
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 416
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 427
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 662437636
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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