Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0003_M06
(469 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC18H10.12c |rpl701||60S ribosomal protein L7|Schizosaccharomy... 211 3e-56
SPAC3H5.07 |rpl702|rpl7-2, rpl7, rpl7b|60S ribosomal protein L7|... 211 3e-56
SPAC664.06 |rpl703|rpl7|60S ribosomal protein L7|Schizosaccharom... 175 2e-45
SPAC26F1.01 |sec74|SPAPJ691.01c|guanyl-nucleotide exchange facto... 31 0.088
SPAC1805.06c |hem2||porphobilinogen synthase Hem2 |Schizosacchar... 30 0.15
SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1 |Schi... 29 0.47
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce... 27 1.1
SPAC3C7.11c |cnx1|cal1, cal1|calnexin |Schizosaccharomyces pombe... 27 1.4
SPAPB8E5.03 |mae1||malic acid transport protein Mae1 |Schizosacc... 27 1.4
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 27 1.9
SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 26 3.3
SPBC16C6.13c |sec27||coatomer beta' subunit |Schizosaccharomyces... 26 3.3
SPCC553.01c ||SPCC736.01c|meiotic chromosome segregation protein... 25 4.4
SPAC22F8.04 |||triose phosphate transporter |Schizosaccharomyces... 25 4.4
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual 25 4.4
SPBC32H8.10 |cdk9||cyclin-dependent protein kinase Cdk9 |Schizos... 25 5.8
SPCC1672.10 |mis16||kinetochore protein Mis16 |Schizosaccharomyc... 25 7.6
SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large subunit|... 25 7.6
>SPBC18H10.12c |rpl701||60S ribosomal protein L7|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 251
Score = 211 bits (516), Expect = 3e-56
Identities = 91/154 (59%), Positives = 122/154 (79%), Gaps = 1/154 (0%)
Frame = +1
Query: 10 PGEAKLAFVIRIRGVNQVSPKVRKVLQLFRLRQINNGVFVRLNKATVNMLRIAEPYIAWG 189
P E KL FVIRIRG+N + PK RK++QL RL QINNGVFV+ NKAT ML++ EPY+ +G
Sbjct: 86 PDETKLVFVIRIRGINNIPPKARKIMQLLRLIQINNGVFVKFNKATKEMLQVVEPYVTYG 145
Query: 190 YPNLKSVRELVYKRGFAKLNGKRVPITSNSLIEKRLSKQNIICVEDLIHEIFTVGEKFKY 369
PNLK+VREL+YKRGF K+N +R+ ++ N++IE L K +I+ +EDLIHEI+TVG FK
Sbjct: 146 IPNLKTVRELLYKRGFGKVNKQRIALSDNAIIEAALGKYSILSIEDLIHEIYTVGPNFKQ 205
Query: 370 ASNFLWPFKLNNPTGGWR-KKTIHYVDGGDFGNR 468
A+NF+WPF+L++P GGWR +K H+++GGD G R
Sbjct: 206 AANFIWPFQLSSPLGGWRDRKFKHFIEGGDAGKR 239
>SPAC3H5.07 |rpl702|rpl7-2, rpl7, rpl7b|60S ribosomal protein
L7|Schizosaccharomyces pombe|chr 1|||Manual
Length = 250
Score = 211 bits (516), Expect = 3e-56
Identities = 91/154 (59%), Positives = 121/154 (78%), Gaps = 1/154 (0%)
Frame = +1
Query: 10 PGEAKLAFVIRIRGVNQVSPKVRKVLQLFRLRQINNGVFVRLNKATVNMLRIAEPYIAWG 189
P E KL FV+RIRG+N + PK RK++QL RL QINNG+FV+ NKA ML++ EPY+ +G
Sbjct: 85 PHEPKLIFVVRIRGINNIPPKARKIMQLLRLLQINNGIFVKFNKAIKEMLQVVEPYVTYG 144
Query: 190 YPNLKSVRELVYKRGFAKLNGKRVPITSNSLIEKRLSKQNIICVEDLIHEIFTVGEKFKY 369
PN K+VREL+YKRGF K+N +R+P++ N++IE L K +I+ VEDLIHEI+TVG FK
Sbjct: 145 IPNHKTVRELIYKRGFGKVNKQRIPLSDNAIIEAALGKYSILSVEDLIHEIYTVGPNFKQ 204
Query: 370 ASNFLWPFKLNNPTGGWR-KKTIHYVDGGDFGNR 468
A+NFLWPFKL++P GGWR +K H+++GGD G R
Sbjct: 205 AANFLWPFKLSSPLGGWRERKFKHFIEGGDAGKR 238
>SPAC664.06 |rpl703|rpl7|60S ribosomal protein
L7|Schizosaccharomyces pombe|chr 1|||Manual
Length = 249
Score = 175 bits (427), Expect = 2e-45
Identities = 83/152 (54%), Positives = 105/152 (69%), Gaps = 1/152 (0%)
Frame = +1
Query: 10 PGEAKLAFVIRIRGVNQVSPKVRKVLQLFRLRQINNGVFVRLNKATVNMLRIAEPYIAWG 189
P E KL FVIRI GV + PK+RKVL+L RL +INN VFVR NKA MLRI EPY+ +G
Sbjct: 84 PDETKLLFVIRIAGVKNMPPKIRKVLRLLRLSRINNAVFVRNNKAVAQMLRIVEPYVMYG 143
Query: 190 YPNLKSVRELVYKRGFAKLNGKRVPITSNSLIEKRLSKQNIICVEDLIHEIFTVGEKFKY 369
PNL SVREL+YKRGF K+NG+R+ ++ N+LIE+ L K ++I +ED+IHEI+ VG FK
Sbjct: 144 IPNLHSVRELIYKRGFGKINGQRIALSDNALIEEALGKYDVISIEDIIHEIYNVGSHFKE 203
Query: 370 ASNFLWPFKLNNPTGG-WRKKTIHYVDGGDFG 462
+ FLWPF L KK H+ +G G
Sbjct: 204 VTKFLWPFTLTPVKHSLMEKKVKHFNEGRKAG 235
>SPAC26F1.01 |sec74|SPAPJ691.01c|guanyl-nucleotide exchange factor
Sec74|Schizosaccharomyces pombe|chr 1|||Manual
Length = 928
Score = 31.1 bits (67), Expect = 0.088
Identities = 15/35 (42%), Positives = 25/35 (71%)
Frame = +2
Query: 278 HSSRRDLANRTSSALRISSMRYLLSVRSSSTQVTS 382
HSS + L+N+ SSAL+++ + S +SSS+Q +S
Sbjct: 90 HSSSQKLSNKVSSALKLTIPKRWRSSKSSSSQCSS 124
>SPAC1805.06c |hem2||porphobilinogen synthase Hem2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 329
Score = 30.3 bits (65), Expect = 0.15
Identities = 20/69 (28%), Positives = 36/69 (52%), Gaps = 2/69 (2%)
Frame = +1
Query: 196 NLKSVRELVYKRGFAKLNGKRVPITSNSLIEKRLS--KQNIICVEDLIHEIFTVGEKFKY 369
N KSV + G L G ++ I+ + ++ R+ KQ ++ +E L H++ + K+
Sbjct: 143 NAKSVERIAEVSGNYALAGAQI-ISPSDCMDGRVKAIKQKLVELE-LSHKVCVISYSAKF 200
Query: 370 ASNFLWPFK 396
AS F PF+
Sbjct: 201 ASGFFGPFR 209
>SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 374
Score = 28.7 bits (61), Expect = 0.47
Identities = 30/105 (28%), Positives = 50/105 (47%)
Frame = +2
Query: 83 YCSCSGCVRSTTACSFVSTRPQ*TCFVSLSPILHGATPT*RVSESWCTNAVSPN*TGSVS 262
Y + +G +++T + S VS+ + S SP T T S S +++ S + + S S
Sbjct: 116 YLTGNGVLQTTVSSSSVSSTTSSSS--SSSPSSSSTTTTTSPSSSSSSSSSSSS-SSSSS 172
Query: 263 RSPPTHSSRRDLANRTSSALRISSMRYLLSVRSSSTQVTSCGHSN 397
S + SS ++ +SS+ SS S SSS +TS S+
Sbjct: 173 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSVPITSSTSSS 217
Score = 25.0 bits (52), Expect = 5.8
Identities = 16/58 (27%), Positives = 31/58 (53%)
Frame = +2
Query: 209 SESWCTNAVSPN*TGSVSRSPPTHSSRRDLANRTSSALRISSMRYLLSVRSSSTQVTS 382
S S +++ S + S + +HSS ++ +SS+ R SS ++ SSST +++
Sbjct: 195 SSSSSSSSSSSSSVPITSSTSSSHSSSSSSSSSSSSSSRPSSSSSFITTMSSSTFIST 252
>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1036
Score = 27.5 bits (58), Expect = 1.1
Identities = 32/108 (29%), Positives = 50/108 (46%), Gaps = 7/108 (6%)
Frame = +2
Query: 104 VRSTTACSFVSTRPQ*TCFVSLSPILHGATPT*RVSESWCTNAVSPN*TG-------SVS 262
V STTA S ST P T S + +TP V+ + T+A S T SVS
Sbjct: 460 VNSTTATSASST-PL-TSVNSTTATSASSTPLTSVNSTSATSASSTPLTSANSTTSTSVS 517
Query: 263 RSPPTHSSRRDLANRTSSALRISSMRYLLSVRSSSTQVTSCGHSN*TT 406
+ P++++ L + S+ +SS + +SST +TS + T+
Sbjct: 518 STAPSYNTSSVLPTSSVSSTPLSSANSTTATSASSTPLTSVNSTTATS 565
Score = 25.8 bits (54), Expect = 3.3
Identities = 31/108 (28%), Positives = 50/108 (46%), Gaps = 7/108 (6%)
Frame = +2
Query: 104 VRSTTACSFVSTRPQ*TCFVSLSPILHGATPT*RVSESWCTNAVSPN*TG-------SVS 262
V STTA S ST P T S + +TP V+ + T+A S T SVS
Sbjct: 346 VNSTTATSASST-PL-TSVNSTTATSASSTPLTSVNSTSATSASSTPLTSANSTTSTSVS 403
Query: 263 RSPPTHSSRRDLANRTSSALRISSMRYLLSVRSSSTQVTSCGHSN*TT 406
+ P++++ L + S+ +SS + +SST ++S + T+
Sbjct: 404 STAPSYNTSSVLPTSSVSSTPLSSANSTTATSASSTPLSSVNSTTATS 451
>SPAC3C7.11c |cnx1|cal1, cal1|calnexin |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 560
Score = 27.1 bits (57), Expect = 1.4
Identities = 15/41 (36%), Positives = 22/41 (53%)
Frame = +1
Query: 193 PNLKSVRELVYKRGFAKLNGKRVPITSNSLIEKRLSKQNII 315
P LK+ REL+ K+ + V SN ++EK L +II
Sbjct: 423 PKLKAERELLSKQESMEKQSMHVDEESNQILEKFLDVYDII 463
>SPAPB8E5.03 |mae1||malic acid transport protein Mae1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 438
Score = 27.1 bits (57), Expect = 1.4
Identities = 17/59 (28%), Positives = 30/59 (50%), Gaps = 2/59 (3%)
Frame = -3
Query: 434 IVFLRQPPVGLFSLNGHRKLLAYLNFSPTVNISWMRSSTQMMF--CLLSLFSMSELEVI 264
IV++ Q + LFSL G L ++ + T+ SW ++ CLLS+ + ++ I
Sbjct: 68 IVYILQ--IFLFSLFGSCMLFRFIKYPSTIKDSWNHHLEKLFIATCLLSISTFIDMLAI 124
>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 26.6 bits (56), Expect = 1.9
Identities = 30/100 (30%), Positives = 48/100 (48%), Gaps = 2/100 (2%)
Frame = +2
Query: 104 VRSTTACSFVSTRPQ*TC--FVSLSPILHGATPT*RVSESWCTNAVSPN*TGSVSRSPPT 277
V ST++ +F S P T ++S S ++ ++ S S T++ + S S P T
Sbjct: 189 VSSTSSSTFSSAAPTSTSSSYLSSSSVVSSSSSPSSSSSSTLTSS-----SLSTSSIPST 243
Query: 278 HSSRRDLANRTSSALRISSMRYLLSVRSSSTQVTSCGHSN 397
SS ++ TSS+L SS S SSS+ + S S+
Sbjct: 244 SSS----SSSTSSSLSSSSSSSTASSSSSSSSIISSSSSS 279
>SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 536
Score = 25.8 bits (54), Expect = 3.3
Identities = 29/99 (29%), Positives = 45/99 (45%), Gaps = 1/99 (1%)
Frame = +2
Query: 89 SCSGCVRSTTACSFVSTRPQ*TCFVSLSPILHGATPT*RVSESWCTNAVSPN*TGSVSRS 268
S S + S+++ S+ S S L ++ T S S+ T+ VS + S S S
Sbjct: 36 SSSSVIPSSSSSMLSSSSATAISSSSSSSPLSSSSFTSPASSSFITSLVSSSSQQSSSSS 95
Query: 269 PP-THSSRRDLANRTSSALRISSMRYLLSVRSSSTQVTS 382
T SS L + +S++ SS + LS SSS +S
Sbjct: 96 ASLTSSSSATLTSSSSASPTSSSSSHALSSSSSSLVASS 134
>SPBC16C6.13c |sec27||coatomer beta' subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 796
Score = 25.8 bits (54), Expect = 3.3
Identities = 14/39 (35%), Positives = 17/39 (43%), Gaps = 1/39 (2%)
Frame = -2
Query: 396 FEWPQEVTCVLELLTDSKYLMDEILNADDV-LFAKSLLD 283
F W CV S+Y+M +N D FA S LD
Sbjct: 125 FNWDMSWKCVQTFEGHSRYVMSLAINPKDTNTFASSCLD 163
>SPCC553.01c ||SPCC736.01c|meiotic chromosome segregation
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 715
Score = 25.4 bits (53), Expect = 4.4
Identities = 14/43 (32%), Positives = 26/43 (60%)
Frame = +2
Query: 269 PPTHSSRRDLANRTSSALRISSMRYLLSVRSSSTQVTSCGHSN 397
PP HS+ D++N ++ AL S+M + ++ST+ T ++N
Sbjct: 110 PPFHSANSDVSNNSNGALS-SNMLKTHAHHTNSTKSTIFRNAN 151
>SPAC22F8.04 |||triose phosphate transporter |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 383
Score = 25.4 bits (53), Expect = 4.4
Identities = 12/37 (32%), Positives = 25/37 (67%)
Frame = -3
Query: 368 YLNFSPTVNISWMRSSTQMMFCLLSLFSMSELEVIGT 258
Y++ PT+++ ++ S+ +FCL L S++ LE++ T
Sbjct: 253 YVHEYPTLDLIYIFSALMSVFCL--LLSVASLELLHT 287
>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1236
Score = 25.4 bits (53), Expect = 4.4
Identities = 26/83 (31%), Positives = 41/83 (49%), Gaps = 1/83 (1%)
Frame = +2
Query: 152 TCFVSLSPILHGATPT*RVSESWCTNAVSPN*TGSVSRSPPTHSSRRDLANRTSSALRIS 331
T S S ++ ++P S S ++ S T S S S THSS A +SSA+ S
Sbjct: 676 TLVSSSSSLIVSSSPVASSSSSPIPSSSSLVSTYSASLSNITHSSLSLTAMSSSSAIPTS 735
Query: 332 -SMRYLLSVRSSSTQVTSCGHSN 397
+ L++ SS+T ++S S+
Sbjct: 736 VNSSTLITASSSNTLLSSITSSS 758
>SPBC32H8.10 |cdk9||cyclin-dependent protein kinase Cdk9
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 591
Score = 25.0 bits (52), Expect = 5.8
Identities = 13/40 (32%), Positives = 22/40 (55%)
Frame = -2
Query: 402 VQFEWPQEVTCVLELLTDSKYLMDEILNADDVLFAKSLLD 283
V+F PQ + +L +KYL D+++ D+ A L+D
Sbjct: 136 VKFTEPQIKCYMKQLFAGTKYLHDQLILHRDLKAANLLID 175
>SPCC1672.10 |mis16||kinetochore protein Mis16 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 430
Score = 24.6 bits (51), Expect = 7.6
Identities = 16/50 (32%), Positives = 21/50 (42%)
Frame = -3
Query: 425 LRQPPVGLFSLNGHRKLLAYLNFSPTVNISWMRSSTQMMFCLLSLFSMSE 276
LR P L +L GH + L +SP SST C+ L + E
Sbjct: 311 LRNPYQRLHTLEGHEDEVYGLEWSPHDEPILASSSTDRRVCIWDLEKIGE 360
>SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1752
Score = 24.6 bits (51), Expect = 7.6
Identities = 10/34 (29%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Frame = -3
Query: 434 IVFLRQPPVGLFSLNGHR-KLLAYLNFSPTVNIS 336
++F RQP + S+ GHR +++ Y F ++++
Sbjct: 448 VIFNRQPSLHKMSMMGHRIRVMPYSTFRLNLSVT 481
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,856,894
Number of Sequences: 5004
Number of extensions: 36263
Number of successful extensions: 146
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 137
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 144
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 178394480
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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