Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0003_M05
         (96 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC24C9.03 |mvd1||diphosphomevalonate decarboxylase |Schizosacc...    25   1.3  
SPBC31F10.03 |||ChaC-like protein|Schizosaccharomyces pombe|chr ...    23   4.1  

>SPAC24C9.03 |mvd1||diphosphomevalonate decarboxylase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 393

 Score = 25.0 bits (52), Expect = 1.3
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = -1

Query: 96  PSRLSGDLCSVCGVSCRSLRGAFVTW 19
           P++LS       G +CRSL G +V W
Sbjct: 145 PTQLSRIARQGSGSACRSLFGGYVAW 170


>SPBC31F10.03 |||ChaC-like protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 203

 Score = 23.4 bits (48), Expect = 4.1
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = -3

Query: 52  LQELAGCVRHVDPE 11
           L ELA C+RH+ PE
Sbjct: 169 LFELAKCLRHLSPE 182


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.309    0.125    0.370 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 400,810
Number of Sequences: 5004
Number of extensions: 3336
Number of successful extensions: 4
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 2,362,478
effective HSP length: 13
effective length of database: 2,297,426
effective search space used: 41353668
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.7 bits)