Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0003_M05
         (96 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_06_0221 - 21387365-21387652,21387892-21389952,21390360-21390395     27   1.6  
05_01_0533 + 4594169-4595065,4598375-4598983                           26   4.8  
01_06_0383 - 28903620-28904077,28904172-28904259                       26   4.8  
11_02_0069 - 8002358-8003407,8003563-8003678,8003770-8003809,800...    25   8.3  

>11_06_0221 - 21387365-21387652,21387892-21389952,21390360-21390395
          Length = 794

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 15/24 (62%), Positives = 17/24 (70%)
 Frame = +1

Query: 1   ARGALGPRDERTPQAPAANPTHGA 72
           ARG L PRD RT  +PAA P+ GA
Sbjct: 81  ARGKLRPRDIRT--SPAAPPSPGA 102


>05_01_0533 + 4594169-4595065,4598375-4598983
          Length = 501

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = +1

Query: 37 PQAPAANPTHGAEVAAQPA 93
          P +P+ +P HGA    QPA
Sbjct: 3  PSSPSPSPPHGAAAVKQPA 21


>01_06_0383 - 28903620-28904077,28904172-28904259
          Length = 181

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 12/23 (52%), Positives = 12/23 (52%)
 Frame = -2

Query: 71  APCVGLAAGACGVRSSRGPRAPR 3
           APC G  AG  G R    P APR
Sbjct: 103 APCSGGPAGVVGGRRPSAPPAPR 125


>11_02_0069 -
           8002358-8003407,8003563-8003678,8003770-8003809,
           8003967-8004005
          Length = 414

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 11/21 (52%), Positives = 16/21 (76%)
 Frame = +1

Query: 28  ERTPQAPAANPTHGAEVAAQP 90
           ERT ++P A+ T+ +EVAA P
Sbjct: 358 ERTSRSPLADMTNVSEVAAAP 378


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.309    0.125    0.370 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,198,279
Number of Sequences: 37544
Number of extensions: 34224
Number of successful extensions: 151
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 151
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 151
length of database: 14,793,348
effective HSP length: 13
effective length of database: 14,305,276
effective search space used: 257494968
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.7 bits)