Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0003_M05
(96 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z78201-2|CAB01588.1| 324|Caenorhabditis elegans Hypothetical pr... 25 7.2
AF465981-1|AAL76993.1| 324|Caenorhabditis elegans cuticle colla... 25 7.2
AF262406-1|AAL08218.1| 324|Caenorhabditis elegans cuticle colla... 25 7.2
Z96102-5|CAB54262.2| 1096|Caenorhabditis elegans Hypothetical pr... 25 9.5
Z96102-4|CAB54263.1| 1192|Caenorhabditis elegans Hypothetical pr... 25 9.5
Z81027-6|CAB54178.2| 1096|Caenorhabditis elegans Hypothetical pr... 25 9.5
Z81027-5|CAB54179.1| 1192|Caenorhabditis elegans Hypothetical pr... 25 9.5
U40858-1|AAA83272.1| 1096|Caenorhabditis elegans serine/threonin... 25 9.5
U22183-1|AAA97437.1| 1192|Caenorhabditis elegans serine/threonin... 25 9.5
U21308-10|AAN65281.1| 329|Caenorhabditis elegans Roller: helica... 25 9.5
M25477-1|AAA27991.1| 329|Caenorhabditis elegans collagen protein. 25 9.5
>Z78201-2|CAB01588.1| 324|Caenorhabditis elegans Hypothetical
protein ZK836.1 protein.
Length = 324
Score = 25.0 bits (52), Expect = 7.2
Identities = 11/31 (35%), Positives = 15/31 (48%)
Frame = +1
Query: 4 RGALGPRDERTPQAPAANPTHGAEVAAQPAR 96
+G+ GP E P+ P+ P AE P R
Sbjct: 276 QGSAGPDGEEGPRGPSGLPGKDAEYCKCPTR 306
>AF465981-1|AAL76993.1| 324|Caenorhabditis elegans cuticle collagen
LON-3 protein.
Length = 324
Score = 25.0 bits (52), Expect = 7.2
Identities = 11/31 (35%), Positives = 15/31 (48%)
Frame = +1
Query: 4 RGALGPRDERTPQAPAANPTHGAEVAAQPAR 96
+G+ GP E P+ P+ P AE P R
Sbjct: 276 QGSAGPDGEEGPRGPSGLPGKDAEYCKCPTR 306
>AF262406-1|AAL08218.1| 324|Caenorhabditis elegans cuticle collagen
protein LON-3 protein.
Length = 324
Score = 25.0 bits (52), Expect = 7.2
Identities = 11/31 (35%), Positives = 15/31 (48%)
Frame = +1
Query: 4 RGALGPRDERTPQAPAANPTHGAEVAAQPAR 96
+G+ GP E P+ P+ P AE P R
Sbjct: 276 QGSAGPDGEEGPRGPSGLPGKDAEYCKCPTR 306
>Z96102-5|CAB54262.2| 1096|Caenorhabditis elegans Hypothetical
protein H39E23.1b protein.
Length = 1096
Score = 24.6 bits (51), Expect = 9.5
Identities = 12/29 (41%), Positives = 15/29 (51%)
Frame = +3
Query: 9 RSGST*RTHPASSCS*PHTRSRGRRSACS 95
R S+ R+HP S S H RS G+ S
Sbjct: 78 RYSSSGRSHPTSGSSSSHARSTGQSGMSS 106
>Z96102-4|CAB54263.1| 1192|Caenorhabditis elegans Hypothetical
protein H39E23.1a protein.
Length = 1192
Score = 24.6 bits (51), Expect = 9.5
Identities = 12/29 (41%), Positives = 15/29 (51%)
Frame = +3
Query: 9 RSGST*RTHPASSCS*PHTRSRGRRSACS 95
R S+ R+HP S S H RS G+ S
Sbjct: 126 RYSSSGRSHPTSGSSSSHARSTGQSGMSS 154
>Z81027-6|CAB54178.2| 1096|Caenorhabditis elegans Hypothetical
protein H39E23.1b protein.
Length = 1096
Score = 24.6 bits (51), Expect = 9.5
Identities = 12/29 (41%), Positives = 15/29 (51%)
Frame = +3
Query: 9 RSGST*RTHPASSCS*PHTRSRGRRSACS 95
R S+ R+HP S S H RS G+ S
Sbjct: 78 RYSSSGRSHPTSGSSSSHARSTGQSGMSS 106
>Z81027-5|CAB54179.1| 1192|Caenorhabditis elegans Hypothetical
protein H39E23.1a protein.
Length = 1192
Score = 24.6 bits (51), Expect = 9.5
Identities = 12/29 (41%), Positives = 15/29 (51%)
Frame = +3
Query: 9 RSGST*RTHPASSCS*PHTRSRGRRSACS 95
R S+ R+HP S S H RS G+ S
Sbjct: 126 RYSSSGRSHPTSGSSSSHARSTGQSGMSS 154
>U40858-1|AAA83272.1| 1096|Caenorhabditis elegans serine/threonine
kinase protein.
Length = 1096
Score = 24.6 bits (51), Expect = 9.5
Identities = 12/29 (41%), Positives = 15/29 (51%)
Frame = +3
Query: 9 RSGST*RTHPASSCS*PHTRSRGRRSACS 95
R S+ R+HP S S H RS G+ S
Sbjct: 78 RYSSSGRSHPTSGSSSSHARSTGQSGMSS 106
>U22183-1|AAA97437.1| 1192|Caenorhabditis elegans serine/threonine
kinase protein.
Length = 1192
Score = 24.6 bits (51), Expect = 9.5
Identities = 12/29 (41%), Positives = 15/29 (51%)
Frame = +3
Query: 9 RSGST*RTHPASSCS*PHTRSRGRRSACS 95
R S+ R+HP S S H RS G+ S
Sbjct: 126 RYSSSGRSHPTSGSSSSHARSTGQSGMSS 154
>U21308-10|AAN65281.1| 329|Caenorhabditis elegans Roller: helically
twisted, animalsroll when moving protein 8, isoform a
protein.
Length = 329
Score = 24.6 bits (51), Expect = 9.5
Identities = 10/26 (38%), Positives = 13/26 (50%)
Frame = -2
Query: 83 AATSAPCVGLAAGACGVRSSRGPRAP 6
A S PC+ GA G + GP+ P
Sbjct: 177 APASEPCIICPTGAPGPMGAMGPKGP 202
>M25477-1|AAA27991.1| 329|Caenorhabditis elegans collagen protein.
Length = 329
Score = 24.6 bits (51), Expect = 9.5
Identities = 10/26 (38%), Positives = 13/26 (50%)
Frame = -2
Query: 83 AATSAPCVGLAAGACGVRSSRGPRAP 6
A S PC+ GA G + GP+ P
Sbjct: 177 APASEPCIICPTGAPGPMGAMGPKGP 202
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.309 0.125 0.370
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,349,621
Number of Sequences: 27780
Number of extensions: 22998
Number of successful extensions: 122
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 120
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 122
length of database: 12,740,198
effective HSP length: 13
effective length of database: 12,379,058
effective search space used: 222823044
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.7 bits)
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