Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0003_M03
         (484 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC18H10.12c |rpl701||60S ribosomal protein L7|Schizosaccharomy...    48   7e-07
SPAC3H5.07 |rpl702|rpl7-2, rpl7, rpl7b|60S ribosomal protein L7|...    47   1e-06
SPAC664.06 |rpl703|rpl7|60S ribosomal protein L7|Schizosaccharom...    44   9e-06
SPCC584.03c |||RanGTP-binding protein |Schizosaccharomyces pombe...    25   6.0  
SPCC1442.02 ||SPCC1450.18|DUF1760 family protein|Schizosaccharom...    25   7.9  

>SPBC18H10.12c |rpl701||60S ribosomal protein L7|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 251

 Score = 48.0 bits (109), Expect = 7e-07
 Identities = 21/34 (61%), Positives = 25/34 (73%)
 Frame = +3

Query: 381 QYRIKERDEIRLARQARNRGNYYVPGEAKLAFVI 482
           +YR  ER++I L R+AR  GNYYVP E KL FVI
Sbjct: 62  EYRKAEREQIELGRKARAEGNYYVPDETKLVFVI 95



 Score = 24.6 bits (51), Expect = 7.9
 Identities = 15/50 (30%), Positives = 21/50 (42%)
 Frame = +2

Query: 224 SKKLPAVPESVXXXXXXXXXXXXXXXQITLKRRSASIKKRNEIFKRAEQY 373
           SK+    PES+                   ++++A  KKR  I KRAE Y
Sbjct: 10  SKEQIFAPESLLKKKKTQEQSREQRVAAAAEKKAAQQKKRELIAKRAESY 59


>SPAC3H5.07 |rpl702|rpl7-2, rpl7, rpl7b|60S ribosomal protein
           L7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 250

 Score = 47.2 bits (107), Expect = 1e-06
 Identities = 20/34 (58%), Positives = 26/34 (76%)
 Frame = +3

Query: 381 QYRIKERDEIRLARQARNRGNYYVPGEAKLAFVI 482
           +YR  ER++I LAR+AR  GNY+VP E KL FV+
Sbjct: 61  EYRAAEREQIELARKARAEGNYFVPHEPKLIFVV 94


>SPAC664.06 |rpl703|rpl7|60S ribosomal protein
           L7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 249

 Score = 44.4 bits (100), Expect = 9e-06
 Identities = 19/45 (42%), Positives = 28/45 (62%)
 Frame = +3

Query: 348 KSLREPNNMSKQYRIKERDEIRLARQARNRGNYYVPGEAKLAFVI 482
           ++ +        YR +ER+ IRL R A+N+G+ +VP E KL FVI
Sbjct: 49  ETFKRAETFINNYRQRERERIRLNRSAKNKGDIFVPDETKLLFVI 93


>SPCC584.03c |||RanGTP-binding protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 551

 Score = 25.0 bits (52), Expect = 6.0
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = -2

Query: 96  TSVYNKIIKHLVTCGIKLHAARVSSYQKKAS 4
           T   N  +KH ++   KL   +VSSY K+AS
Sbjct: 13  TFATNFALKHSISFAGKLAVQQVSSYIKRAS 43


>SPCC1442.02 ||SPCC1450.18|DUF1760 family
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 562

 Score = 24.6 bits (51), Expect = 7.9
 Identities = 12/39 (30%), Positives = 19/39 (48%)
 Frame = -2

Query: 129 NRFSKTYYVKITSVYNKIIKHLVTCGIKLHAARVSSYQK 13
           N+F   Y+ KI+   N     L T G+K +   ++S  K
Sbjct: 524 NQFPTVYFTKISDQINNYEGELPTDGLKYYIELLNSRNK 562


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,815,964
Number of Sequences: 5004
Number of extensions: 32583
Number of successful extensions: 81
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 77
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 81
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 186042952
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)