Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0003_M03
         (484 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0835 + 8147177-8147359,8147871-8147968,8148045-8148102,814...    38   0.003
04_04_1075 + 30634141-30634320,30634917-30635014,30635113-306351...    37   0.007
09_04_0087 + 14476539-14476675,14478876-14479635,14479720-144798...    28   4.5  
06_03_0161 - 17369081-17369670,17370745-17370760,17370974-173717...    28   4.5  
03_01_0013 - 105281-105552,105762-105838,105839-106524,106655-10...    27   7.9  

>08_01_0835 +
           8147177-8147359,8147871-8147968,8148045-8148102,
           8148192-8148271,8148770-8148872,8148966-8149181
          Length = 245

 Score = 38.3 bits (85), Expect = 0.003
 Identities = 15/36 (41%), Positives = 27/36 (75%)
 Frame = +3

Query: 375 SKQYRIKERDEIRLARQARNRGNYYVPGEAKLAFVI 482
           +++Y  +E++ ++L R+AR +G +YV  EAKL FV+
Sbjct: 55  AQEYDAQEKELVQLKREARMKGGFYVSPEAKLLFVV 90


>04_04_1075 +
           30634141-30634320,30634917-30635014,30635113-30635170,
           30635259-30635338,30635686-30635788,30635847-30636080
          Length = 250

 Score = 37.1 bits (82), Expect = 0.007
 Identities = 14/36 (38%), Positives = 26/36 (72%)
 Frame = +3

Query: 375 SKQYRIKERDEIRLARQARNRGNYYVPGEAKLAFVI 482
           +++Y  +E++ ++L R+AR +G +YV  E KL FV+
Sbjct: 54  AEEYEAQEKELVQLKREARMKGGFYVSPEEKLLFVV 89


>09_04_0087 + 14476539-14476675,14478876-14479635,14479720-14479871,
            14479958-14480024,14480632-14480831,14480915-14481068,
            14481585-14481669,14481766-14481857,14482575-14482766,
            14482867-14482992,14483072-14483125,14483494-14483550,
            14484509-14484606,14484703-14485038,14485116-14485203,
            14486891-14487016,14487082-14487138,14488054-14488133,
            14488228-14488270,14488948-14489034,14489331-14489420,
            14489996-14490054,14490141-14490231,14490330-14490495,
            14490662-14490755,14491787-14492909
          Length = 1537

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 21/82 (25%), Positives = 37/82 (45%)
 Frame = +1

Query: 106  IIRLREPIGSASSSYYSHDGCDYRKEGCGREKTCEG*RGQ*EVASCSGISLEAP*KEGGT 285
            ++++R    S+SS     D  D+R    GR +         E   CS +S++AP  E   
Sbjct: 1277 VVKIRVKRASSSSKA---DDADHRDHSHGRNEN--------EAGPCSSMSVDAPMTEAPE 1325

Query: 286  PSSPSSDHTQEAFRFH*EEERN 351
            P + S+ + +E    H  E+ +
Sbjct: 1326 PVNVSNHNIEEQNSCHDREQNS 1347


>06_03_0161 -
           17369081-17369670,17370745-17370760,17370974-17371754,
           17371871-17371972,17372078-17372397
          Length = 602

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 15/38 (39%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
 Frame = -1

Query: 388 RYCLDILFGSLKDFVPLLN--GSGTPLECDLKTASSEC 281
           RY   I+ GS+  ++P+L   G G PL   +  AS+EC
Sbjct: 314 RYIRTIVTGSMSQYIPILEVYGGGLPLVSPI-YASTEC 350


>03_01_0013 -
           105281-105552,105762-105838,105839-106524,106655-106738,
           106914-107114,107202-107309,107766-107855,108505-108551,
           109096-109276,110010-110135,110220-110386,110877-111072
          Length = 744

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = -1

Query: 415 NLISSRSLMRYCLDILFGSLKDFVPLLNGSGTPL 314
           NL    +LM +C+  +FG+L  F+     SG  L
Sbjct: 189 NLSELWALMHFCMPSIFGTLDQFLSTFKQSGDSL 222


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,912,934
Number of Sequences: 37544
Number of extensions: 223308
Number of successful extensions: 623
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 611
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 623
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 987904180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)