Samia BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0003_M03
         (484 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X15109-1|CAA33207.1|  239|Drosophila melanogaster ribosomal  pro...    42   6e-04
AY089648-1|AAL90386.1|  252|Drosophila melanogaster RH04903p pro...    42   6e-04
AE014134-1774|AAF52868.1|  252|Drosophila melanogaster CG4897-PA...    42   6e-04
AY047570-1|AAK77302.1|  941|Drosophila melanogaster GH08340p pro...    29   2.5  
AE014134-2945|AAF53679.1|  941|Drosophila melanogaster CG10413-P...    29   2.5  
AE014298-1829|AAN09643.1|  381|Drosophila melanogaster CG32642-P...    29   4.4  
AE014134-1652|AAF52785.1|  417|Drosophila melanogaster CG13114-P...    29   4.4  

>X15109-1|CAA33207.1|  239|Drosophila melanogaster ribosomal
           protein protein.
          Length = 239

 Score = 41.5 bits (93), Expect = 6e-04
 Identities = 20/48 (41%), Positives = 28/48 (58%)
 Frame = +3

Query: 339 RGTKSLREPNNMSKQYRIKERDEIRLARQARNRGNYYVPGEAKLAFVI 482
           R  ++L        +Y   E+ EI+L R A+ R  +YVP EAKLAFV+
Sbjct: 36  RKKENLVRAEKYQNEYIKAEQREIKLRRLAKKRNQFYVPAEAKLAFVV 83


>AY089648-1|AAL90386.1|  252|Drosophila melanogaster RH04903p
           protein.
          Length = 252

 Score = 41.5 bits (93), Expect = 6e-04
 Identities = 20/48 (41%), Positives = 28/48 (58%)
 Frame = +3

Query: 339 RGTKSLREPNNMSKQYRIKERDEIRLARQARNRGNYYVPGEAKLAFVI 482
           R  ++L        +Y   E+ EI+L R A+ R  +YVP EAKLAFV+
Sbjct: 49  RKKENLVRAEKYQNEYIKAEQREIKLRRLAKKRNQFYVPAEAKLAFVV 96



 Score = 31.1 bits (67), Expect = 0.83
 Identities = 19/57 (33%), Positives = 26/57 (45%)
 Frame = +2

Query: 203 PVKGKEDSKKLPAVPESVXXXXXXXXXXXXXXXQITLKRRSASIKKRNEIFKRAEQY 373
           PV  K  +KKLPAVPES                +  LK+ +    ++ E   RAE+Y
Sbjct: 4   PVVKKPAAKKLPAVPESKLKFSKKQISKRVAESKRRLKKAAVIALRKKENLVRAEKY 60


>AE014134-1774|AAF52868.1|  252|Drosophila melanogaster CG4897-PA
           protein.
          Length = 252

 Score = 41.5 bits (93), Expect = 6e-04
 Identities = 20/48 (41%), Positives = 28/48 (58%)
 Frame = +3

Query: 339 RGTKSLREPNNMSKQYRIKERDEIRLARQARNRGNYYVPGEAKLAFVI 482
           R  ++L        +Y   E+ EI+L R A+ R  +YVP EAKLAFV+
Sbjct: 49  RKKENLVRAEKYQNEYIKAEQREIKLRRLAKKRNQFYVPAEAKLAFVV 96



 Score = 31.1 bits (67), Expect = 0.83
 Identities = 19/57 (33%), Positives = 26/57 (45%)
 Frame = +2

Query: 203 PVKGKEDSKKLPAVPESVXXXXXXXXXXXXXXXQITLKRRSASIKKRNEIFKRAEQY 373
           PV  K  +KKLPAVPES                +  LK+ +    ++ E   RAE+Y
Sbjct: 4   PVVKKPAAKKLPAVPESKLKFSKKQISKRVAESKRRLKKAAVIALRKKENLVRAEKY 60


>AY047570-1|AAK77302.1|  941|Drosophila melanogaster GH08340p
           protein.
          Length = 941

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 28/72 (38%), Positives = 35/72 (48%), Gaps = 1/72 (1%)
 Frame = -1

Query: 421 LANLI-SSRSLMRYCLDILFGSLKDFVPLLNGSGTPLECDLKTASSECLPPFTVLQD*FR 245
           L+NLI SSR L     D +FGSL +FV      G P+      A S CL    +L   F 
Sbjct: 387 LSNLIGSSRILEALSKDQVFGSLLNFVIHGTWKGNPIAA---VAVSWCLVECILLIGSFN 443

Query: 244 NSWQLLTVLFTL 209
              Q+ +VLF L
Sbjct: 444 IIAQINSVLFML 455


>AE014134-2945|AAF53679.1|  941|Drosophila melanogaster CG10413-PA
           protein.
          Length = 941

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 28/72 (38%), Positives = 35/72 (48%), Gaps = 1/72 (1%)
 Frame = -1

Query: 421 LANLI-SSRSLMRYCLDILFGSLKDFVPLLNGSGTPLECDLKTASSECLPPFTVLQD*FR 245
           L+NLI SSR L     D +FGSL +FV      G P+      A S CL    +L   F 
Sbjct: 387 LSNLIGSSRILEALSKDQVFGSLLNFVIHGTWKGNPIAA---VAVSWCLVECILLIGSFN 443

Query: 244 NSWQLLTVLFTL 209
              Q+ +VLF L
Sbjct: 444 IIAQINSVLFML 455


>AE014298-1829|AAN09643.1|  381|Drosophila melanogaster CG32642-PC
           protein.
          Length = 381

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = -3

Query: 272 FYGASRLIPEQLATSYCPLYPSQVFSRPQPSF 177
           F G   LI   L  SYCP YP + +  P P++
Sbjct: 85  FAGKKELIQTDL--SYCPSYPPRPYGPPAPAY 114


>AE014134-1652|AAF52785.1|  417|Drosophila melanogaster CG13114-PA
           protein.
          Length = 417

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 17/43 (39%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
 Frame = -3

Query: 284 VPPSFYGASRLIPEQL-ATSYCPLYPSQVFSRPQPSFL*SQPS 159
           V P+  G S L P    ATS  P+YP+   + P P+   +QPS
Sbjct: 39  VAPTTTGGSTLSPPTTSATSPGPIYPTTTSAPPTPTDYTTQPS 81


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,007,823
Number of Sequences: 53049
Number of extensions: 386698
Number of successful extensions: 937
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 909
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 937
length of database: 24,988,368
effective HSP length: 79
effective length of database: 20,797,497
effective search space used: 1684597257
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)