Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0003_M03
(484 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF003139-2|AAB54165.1| 244|Caenorhabditis elegans Ribosomal pro... 41 4e-04
Z82264-3|CAB05166.1| 277|Caenorhabditis elegans Hypothetical pr... 30 1.0
Z82095-7|CAN86628.1| 390|Caenorhabditis elegans Hypothetical pr... 28 3.1
Z82095-6|CAI79281.2| 412|Caenorhabditis elegans Hypothetical pr... 28 3.1
Z82095-5|CAB05026.2| 414|Caenorhabditis elegans Hypothetical pr... 28 3.1
Z81519-2|CAB04217.1| 468|Caenorhabditis elegans Hypothetical pr... 27 9.4
Z30974-5|CAH19087.1| 3183|Caenorhabditis elegans Hypothetical pr... 27 9.4
Z30974-4|CAA83226.2| 3767|Caenorhabditis elegans Hypothetical pr... 27 9.4
Z30423-15|CAH19103.1| 3183|Caenorhabditis elegans Hypothetical p... 27 9.4
Z30423-14|CAC42345.1| 3767|Caenorhabditis elegans Hypothetical p... 27 9.4
AF139060-1|AAD29428.1| 3767|Caenorhabditis elegans transmembrane... 27 9.4
>AF003139-2|AAB54165.1| 244|Caenorhabditis elegans Ribosomal
protein, large subunitprotein 7 protein.
Length = 244
Score = 41.1 bits (92), Expect = 4e-04
Identities = 16/46 (34%), Positives = 30/46 (65%)
Frame = +3
Query: 345 TKSLREPNNMSKQYRIKERDEIRLARQARNRGNYYVPGEAKLAFVI 482
T+ + ++YR +++ +RL R+A +G++YVP E K+AFV+
Sbjct: 44 TQYFKRAEKYVQEYRNAQKEGLRLKREAEAKGDFYVPAEHKVAFVV 89
Score = 34.3 bits (75), Expect = 0.047
Identities = 17/52 (32%), Positives = 27/52 (51%)
Frame = +2
Query: 224 SKKLPAVPESVXXXXXXXXXXXXXXXQITLKRRSASIKKRNEIFKRAEQYVQ 379
+KK+P VPE+V Q + + + +K+ + FKRAE+YVQ
Sbjct: 4 TKKVPQVPETVLKRRKQRADARTKAAQHKVTVAAKNKEKKTQYFKRAEKYVQ 55
>Z82264-3|CAB05166.1| 277|Caenorhabditis elegans Hypothetical
protein C49C3.7 protein.
Length = 277
Score = 29.9 bits (64), Expect = 1.0
Identities = 15/50 (30%), Positives = 25/50 (50%)
Frame = +3
Query: 303 RSHSRGVPLPLRRGTKSLREPNNMSKQYRIKERDEIRLARQARNRGNYYV 452
RS S VP R LRE M + R K +E+++ + +RG+ ++
Sbjct: 202 RSESVEVPNDSNRDIWELREDLEMERSARRKAEEELKILKMTSSRGSMHI 251
>Z82095-7|CAN86628.1| 390|Caenorhabditis elegans Hypothetical
protein ZK849.2c protein.
Length = 390
Score = 28.3 bits (60), Expect = 3.1
Identities = 11/30 (36%), Positives = 19/30 (63%)
Frame = +3
Query: 303 RSHSRGVPLPLRRGTKSLREPNNMSKQYRI 392
R +++G+ PLR KSLR+ N + K ++
Sbjct: 233 RGNTKGLTAPLRHNFKSLRKRNGVGKSRKV 262
>Z82095-6|CAI79281.2| 412|Caenorhabditis elegans Hypothetical
protein ZK849.2b protein.
Length = 412
Score = 28.3 bits (60), Expect = 3.1
Identities = 11/30 (36%), Positives = 19/30 (63%)
Frame = +3
Query: 303 RSHSRGVPLPLRRGTKSLREPNNMSKQYRI 392
R +++G+ PLR KSLR+ N + K ++
Sbjct: 255 RGNTKGLTAPLRHNFKSLRKRNGVGKSRKV 284
>Z82095-5|CAB05026.2| 414|Caenorhabditis elegans Hypothetical
protein ZK849.2a protein.
Length = 414
Score = 28.3 bits (60), Expect = 3.1
Identities = 11/30 (36%), Positives = 19/30 (63%)
Frame = +3
Query: 303 RSHSRGVPLPLRRGTKSLREPNNMSKQYRI 392
R +++G+ PLR KSLR+ N + K ++
Sbjct: 257 RGNTKGLTAPLRHNFKSLRKRNGVGKSRKV 286
>Z81519-2|CAB04217.1| 468|Caenorhabditis elegans Hypothetical
protein F29C12.5 protein.
Length = 468
Score = 26.6 bits (56), Expect = 9.4
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = -1
Query: 340 LLNGSGTPLECDLKTASSECL 278
L+ GSG P+E L A ECL
Sbjct: 240 LIEGSGKPMEIRLDIAEKECL 260
>Z30974-5|CAH19087.1| 3183|Caenorhabditis elegans Hypothetical
protein K08E5.3b protein.
Length = 3183
Score = 26.6 bits (56), Expect = 9.4
Identities = 10/28 (35%), Positives = 15/28 (53%)
Frame = +1
Query: 142 SSYYSHDGCDYRKEGCGREKTCEG*RGQ 225
+S+ + DGCD + CG + C GQ
Sbjct: 441 TSFSTDDGCDPKNPKCGANEACVQRHGQ 468
>Z30974-4|CAA83226.2| 3767|Caenorhabditis elegans Hypothetical protein
K08E5.3a protein.
Length = 3767
Score = 26.6 bits (56), Expect = 9.4
Identities = 10/28 (35%), Positives = 15/28 (53%)
Frame = +1
Query: 142 SSYYSHDGCDYRKEGCGREKTCEG*RGQ 225
+S+ + DGCD + CG + C GQ
Sbjct: 1025 TSFSTDDGCDPKNPKCGANEACVQRHGQ 1052
>Z30423-15|CAH19103.1| 3183|Caenorhabditis elegans Hypothetical
protein K08E5.3b protein.
Length = 3183
Score = 26.6 bits (56), Expect = 9.4
Identities = 10/28 (35%), Positives = 15/28 (53%)
Frame = +1
Query: 142 SSYYSHDGCDYRKEGCGREKTCEG*RGQ 225
+S+ + DGCD + CG + C GQ
Sbjct: 441 TSFSTDDGCDPKNPKCGANEACVQRHGQ 468
>Z30423-14|CAC42345.1| 3767|Caenorhabditis elegans Hypothetical
protein K08E5.3a protein.
Length = 3767
Score = 26.6 bits (56), Expect = 9.4
Identities = 10/28 (35%), Positives = 15/28 (53%)
Frame = +1
Query: 142 SSYYSHDGCDYRKEGCGREKTCEG*RGQ 225
+S+ + DGCD + CG + C GQ
Sbjct: 1025 TSFSTDDGCDPKNPKCGANEACVQRHGQ 1052
>AF139060-1|AAD29428.1| 3767|Caenorhabditis elegans transmembrane cell
adhesion receptorMUA-3 precursor protein.
Length = 3767
Score = 26.6 bits (56), Expect = 9.4
Identities = 10/28 (35%), Positives = 15/28 (53%)
Frame = +1
Query: 142 SSYYSHDGCDYRKEGCGREKTCEG*RGQ 225
+S+ + DGCD + CG + C GQ
Sbjct: 1025 TSFSTDDGCDPKNPKCGANEACVQRHGQ 1052
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,226,635
Number of Sequences: 27780
Number of extensions: 193987
Number of successful extensions: 493
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 475
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 493
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 892829112
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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