Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0003_M03
         (484 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chlor...    23   1.3  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    23   1.3  
AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    23   1.7  

>DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 383

 Score = 23.4 bits (48), Expect = 1.3
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = +3

Query: 354 LREPNNMSKQYRIKERD 404
           LR P NMS+ YRI + D
Sbjct: 66  LRLPENMSEDYRILDVD 82


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 23.4 bits (48), Expect = 1.3
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = +3

Query: 354 LREPNNMSKQYRIKERDEIR 413
           LR P NM+ +YR+ E D ++
Sbjct: 97  LRLPENMTSEYRLLEVDWLK 116


>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 23.0 bits (47), Expect = 1.7
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = +3

Query: 312 SRGVPLPLRRGTKSLREPNNMSKQYRIKERDEIRL 416
           S+ + + + + TK L  P+     YR+KER EI +
Sbjct: 555 SQAMQIHISQSTKELLSPS-----YRVKERGEIEV 584


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 125,807
Number of Sequences: 438
Number of extensions: 2884
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 13174803
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)