Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0003_M02
(468 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC4G8.03c |||RNA-binding protein|Schizosaccharomyces pombe|chr... 39 4e-04
SPAC1687.22c |puf3|SPAC222.02c|RNA-binding protein Puf3 |Schizos... 37 0.001
SPAC4G9.05 |mpf1||meiotic PUF family protein 1|Schizosaccharomyc... 36 0.003
SPCC1682.08c |||RNA-binding protein Mcp2|Schizosaccharomyces pom... 31 0.088
SPCC1259.14c |meu27||S. pombe specific UPF0300 family protein 5|... 29 0.47
SPAPB17E12.11 |||N-oligosaccharyltransferase gamma subunit |Schi... 28 0.82
SPAC6G9.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 28 0.82
SPAC6G9.02c |nop9||RNA-binding protein Nop9|Schizosaccharomyces ... 26 3.3
SPAC19B12.09 |srp14||signal recognition particle subunit Srp14|S... 26 3.3
SPAC19B12.07c |||human ZNF277P homolog|Schizosaccharomyces pombe... 25 4.4
>SPAC4G8.03c |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 780
Score = 38.7 bits (86), Expect = 4e-04
Identities = 27/122 (22%), Positives = 56/122 (45%)
Frame = +2
Query: 95 DYFINVHGSVILQTILDFQRPAKAVSGLLELTSEQLLVILCDAKGCHVADALCKGQFVGV 274
D N++G+ +Q I+D + +S LL++ L + CD G HV C +F
Sbjct: 541 DICSNLYGTRSMQNIIDKLTSNEQISLLLKIIIPSLTTLACDNNGTHVLQK-CIAKFPPE 599
Query: 275 KARDKLIWRLKGYYQKLALSQYGSMAFEQIFEAASDEQKLKIMTELSEKSNLLNGTAYGR 454
K + L ++ LA +++G ++ + + + + +++ + + LL AYG
Sbjct: 600 KL-EPLFLSMEENLITLATNRHGCCILQRCLDRTNGDIQERLVNSIIKSCLLLVQNAYGN 658
Query: 455 LI 460
+
Sbjct: 659 YL 660
Score = 24.6 bits (51), Expect = 7.6
Identities = 10/33 (30%), Positives = 20/33 (60%)
Frame = +2
Query: 320 KLALSQYGSMAFEQIFEAASDEQKLKIMTELSE 418
+L + +G+ +++F AS EQKL ++ + E
Sbjct: 505 QLMIDPFGNYMCQKLFVYASREQKLSMLNGIGE 537
>SPAC1687.22c |puf3|SPAC222.02c|RNA-binding protein Puf3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 732
Score = 37.1 bits (82), Expect = 0.001
Identities = 25/100 (25%), Positives = 46/100 (46%)
Frame = +2
Query: 113 HGSVILQTILDFQRPAKAVSGLLELTSEQLLVILCDAKGCHVADALCKGQFVGVKARDKL 292
HGS +Q L + + E+ S L ++ D G +V +F K + L
Sbjct: 409 HGSRFIQQKLATATEEEREAVFQEIASTSCLQLMMDIFGNYVVQKYF--EFGNEKQKQIL 466
Query: 293 IWRLKGYYQKLALSQYGSMAFEQIFEAASDEQKLKIMTEL 412
+ ++KG+ L+L YG ++ E S E +++++ EL
Sbjct: 467 LSQIKGHVFSLSLQMYGCRVVQKAIEYISPEHQVQLIQEL 506
>SPAC4G9.05 |mpf1||meiotic PUF family protein 1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 581
Score = 35.9 bits (79), Expect = 0.003
Identities = 26/109 (23%), Positives = 51/109 (46%), Gaps = 2/109 (1%)
Frame = +2
Query: 92 KDYFINVHGSVILQTILDFQRPAKAVSGLLELTSEQLLVILCDAKGCHVADALCKGQFVG 271
K+ I+ GS +LQ L+ P + + L+E E L L CHV + +
Sbjct: 333 KELSIDAFGSHVLQKSLEIY-PERFTNNLIEELIECLPATLMQRHSCHVWQKFFETRRKS 391
Query: 272 VKAR--DKLIWRLKGYYQKLALSQYGSMAFEQIFEAASDEQKLKIMTEL 412
+ D +++G + ++++S+ GS+ + IFE ++ K + E+
Sbjct: 392 LVDGIFDHFNKKMQGKWLQVSVSEMGSLVVQTIFENCKEKDKRTCLDEI 440
Score = 28.7 bits (61), Expect = 0.47
Identities = 16/52 (30%), Positives = 30/52 (57%), Gaps = 1/52 (1%)
Frame = +2
Query: 311 YYQKLALSQYGSMAFEQIFEAASDEQKLKIMTELSEKSNL-LNGTAYGRLIA 463
+ Q++A +QYG+ + + + A+ Q + +M E +K + L G YG+ IA
Sbjct: 523 FLQEIASNQYGNYIVQYLLQVATPSQ-INLMAEHLKKHMVSLRGHKYGQRIA 573
>SPCC1682.08c |||RNA-binding protein Mcp2|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 703
Score = 31.1 bits (67), Expect = 0.088
Identities = 13/47 (27%), Positives = 25/47 (53%)
Frame = +2
Query: 323 LALSQYGSMAFEQIFEAASDEQKLKIMTELSEKSNLLNGTAYGRLIA 463
+A QYG+ +QI + +K ++T + + L G+ YG+ +A
Sbjct: 633 IASDQYGNYLIQQIIQLGQPAEKNLVITHIKKHMVSLRGSKYGQKVA 679
Score = 28.3 bits (60), Expect = 0.62
Identities = 15/63 (23%), Positives = 34/63 (53%), Gaps = 2/63 (3%)
Frame = +2
Query: 230 CHVADALCKGQFVG--VKARDKLIWRLKGYYQKLALSQYGSMAFEQIFEAASDEQKLKIM 403
CHV L + Q+ V +++ L+G + ++A+ + GS+ + +FE ++ K + +
Sbjct: 484 CHVWQKLFETQWYEYPVNVMNRVNNALRGKWHEVAVGENGSLVVQNMFENCVEKDKRECI 543
Query: 404 TEL 412
E+
Sbjct: 544 EEI 546
>SPCC1259.14c |meu27||S. pombe specific UPF0300 family protein
5|Schizosaccharomyces pombe|chr 3|||Manual
Length = 736
Score = 28.7 bits (61), Expect = 0.47
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = -1
Query: 432 SRLLFSDNSVIIFSFCSSLAASKICSNAI 346
++ LFSD VI SFC S +CS I
Sbjct: 402 TKFLFSDQKVITPSFCKFAQVSDMCSTEI 430
>SPAPB17E12.11 |||N-oligosaccharyltransferase gamma subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 309
Score = 27.9 bits (59), Expect = 0.82
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = +1
Query: 112 PWFCYIANHFRFSASSESGVRSTGADFG 195
P F +AN ++ +SG+R T ADFG
Sbjct: 73 PEFKALANSYKLKYGLDSGIRFTYADFG 100
>SPAC6G9.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 681
Score = 27.9 bits (59), Expect = 0.82
Identities = 19/88 (21%), Positives = 37/88 (42%)
Frame = +2
Query: 2 HEGEQEQQKYFPVVCLRLLPIDRVDLTQLDKDYFINVHGSVILQTILDFQRPAKAVSGLL 181
H E ++ + ++ +L+PI N+HG+ LQ I+D +S ++
Sbjct: 403 HASEAQRSTFIQIIAPKLVPIS------------FNMHGTRALQKIIDLVSSPDQISCIV 450
Query: 182 ELTSEQLLVILCDAKGCHVADALCKGQF 265
++++ D G HV C +F
Sbjct: 451 NALRPNVVLLTKDLNGNHVIQK-CLNKF 477
>SPAC6G9.02c |nop9||RNA-binding protein Nop9|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 655
Score = 25.8 bits (54), Expect = 3.3
Identities = 12/46 (26%), Positives = 24/46 (52%)
Frame = +2
Query: 302 LKGYYQKLALSQYGSMAFEQIFEAASDEQKLKIMTELSEKSNLLNG 439
L G+Y +L + +GS AFE++ + L+ ++ ++L G
Sbjct: 133 LNGHYVELIQTTFGSYAFEKLLSHMAAILNLETQGVTEDQDDVLEG 178
>SPAC19B12.09 |srp14||signal recognition particle subunit
Srp14|Schizosaccharomyces pombe|chr 1|||Manual
Length = 106
Score = 25.8 bits (54), Expect = 3.3
Identities = 9/14 (64%), Positives = 12/14 (85%)
Frame = +2
Query: 248 LCKGQFVGVKARDK 289
+CKGQ VG+K RD+
Sbjct: 77 VCKGQIVGLKKRDR 90
>SPAC19B12.07c |||human ZNF277P homolog|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 319
Score = 25.4 bits (53), Expect = 4.4
Identities = 14/49 (28%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Frame = +2
Query: 29 YFPVVCLRLLPIDRV-DLTQLDKDYFINVHGSVILQTILDFQRPAKAVS 172
Y PV C I D+ ++ KDY ++V+G++ ++++ R K S
Sbjct: 237 YEPVFCFEHCKIVHDWDIKKIQKDYSLDVYGAI---RVINYSRKTKKKS 282
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,903,310
Number of Sequences: 5004
Number of extensions: 36987
Number of successful extensions: 116
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 110
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 116
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 178394480
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -