Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0003_M02
         (468 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z68302-2|CAA92631.1|  630|Caenorhabditis elegans Hypothetical pr...    42   3e-04
U39854-2|AAA81077.2|  703|Caenorhabditis elegans Puf (pumilio/fb...    31   0.31 
U37548-2|ABK57090.1|  452|Caenorhabditis elegans Sulfatase domai...    31   0.54 
U37548-1|AAA79198.2|  488|Caenorhabditis elegans Sulfatase domai...    31   0.54 
U80847-6|AAK68190.1|  796|Caenorhabditis elegans Hypothetical pr...    27   5.1  
U41020-2|AAA82332.3| 1732|Caenorhabditis elegans Osmotic avoidan...    27   5.1  
U40800-4|AAO91742.1|  763|Caenorhabditis elegans Hypothetical pr...    27   5.1  
DQ360811-1|ABC88648.1| 1737|Caenorhabditis elegans intraflagella...    27   5.1  
U13875-12|AAA21157.2|  321|Caenorhabditis elegans Hypothetical p...    27   6.7  
Z66514-5|CAA91344.1| 1133|Caenorhabditis elegans Hypothetical pr...    27   8.9  
Z34801-9|CAA84332.1| 1133|Caenorhabditis elegans Hypothetical pr...    27   8.9  

>Z68302-2|CAA92631.1|  630|Caenorhabditis elegans Hypothetical
           protein ZK792.5 protein.
          Length = 630

 Score = 41.5 bits (93), Expect = 3e-04
 Identities = 26/123 (21%), Positives = 61/123 (49%), Gaps = 1/123 (0%)
 Frame = +2

Query: 47  LRLLPIDRVDLTQLDKDYFINVHGSVILQTILDFQRPAKAVSGLLELTSEQLLVILCDAK 226
           L +L ++  D +  D   F    G++++  +++F +     +G  +L+ +Q+  + C+  
Sbjct: 471 LNVLTLNGCDGSIFDTQKFTQ-KGTMLVSELVNFSKTKTLATGFEQLSEQQIQEMSCNKY 529

Query: 227 GCHVADALCKGQFVGVKARDKLIWRL-KGYYQKLALSQYGSMAFEQIFEAASDEQKLKIM 403
              +  A+   + +  + ++K+I    K  ++ L    +GS  FE+I+E    ++K +IM
Sbjct: 530 TSRLIQAVLASKTMPEEIKEKIIGAFDKNSWETLITDTFGSRVFEKIWEFVDVKRKQEIM 589

Query: 404 TEL 412
             L
Sbjct: 590 KVL 592


>U39854-2|AAA81077.2|  703|Caenorhabditis elegans Puf (pumilio/fbf)
           domain-containingprotein 9 protein.
          Length = 703

 Score = 31.5 bits (68), Expect = 0.31
 Identities = 22/100 (22%), Positives = 46/100 (46%)
 Frame = +2

Query: 113 HGSVILQTILDFQRPAKAVSGLLELTSEQLLVILCDAKGCHVADALCKGQFVGVKARDKL 292
           HGS  +Q  L+ +   +  + +     E    ++ D  G +V       +F   + R++L
Sbjct: 355 HGSRFIQQKLE-RASLRDKAAIFTPVLENAEELMTDVFGNYVIQKFF--EFGNNEQRNQL 411

Query: 293 IWRLKGYYQKLALSQYGSMAFEQIFEAASDEQKLKIMTEL 412
           +  ++G   KLAL  YG    ++  E   ++ + +I+ E+
Sbjct: 412 VGTIRGNVMKLALQMYGCRVIQKALEYVEEKYQHEILGEM 451


>U37548-2|ABK57090.1|  452|Caenorhabditis elegans Sulfatase domain
           protein protein3, isoform b protein.
          Length = 452

 Score = 30.7 bits (66), Expect = 0.54
 Identities = 20/49 (40%), Positives = 24/49 (48%)
 Frame = +3

Query: 219 MRRVVMWLMLSARVSSLESKRGINSYGDSKAIIRNWLYLNTGRWRLNRF 365
           M  VV W      ++ LE    I+SYGD    I  W YL TGR +  RF
Sbjct: 308 MFHVVDWHATILSITGLE----IDSYGDG---INQWEYLKTGRPKFRRF 349


>U37548-1|AAA79198.2|  488|Caenorhabditis elegans Sulfatase domain
           protein protein3, isoform a protein.
          Length = 488

 Score = 30.7 bits (66), Expect = 0.54
 Identities = 20/49 (40%), Positives = 24/49 (48%)
 Frame = +3

Query: 219 MRRVVMWLMLSARVSSLESKRGINSYGDSKAIIRNWLYLNTGRWRLNRF 365
           M  VV W      ++ LE    I+SYGD    I  W YL TGR +  RF
Sbjct: 344 MFHVVDWHATILSITGLE----IDSYGDG---INQWEYLKTGRPKFRRF 385


>U80847-6|AAK68190.1|  796|Caenorhabditis elegans Hypothetical
           protein C17H11.6b protein.
          Length = 796

 Score = 27.5 bits (58), Expect = 5.1
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = -2

Query: 212 GSPGAVPKSAPVDLTPLSLDA 150
           G+PG +  SAPVDL+    DA
Sbjct: 436 GTPGVISASAPVDLSQFMTDA 456


>U41020-2|AAA82332.3| 1732|Caenorhabditis elegans Osmotic avoidance
           abnormal protein1 protein.
          Length = 1732

 Score = 27.5 bits (58), Expect = 5.1
 Identities = 12/26 (46%), Positives = 18/26 (69%)
 Frame = -1

Query: 414 DNSVIIFSFCSSLAASKICSNAIDPY 337
           D S+I+++F SS   SKIC+  + PY
Sbjct: 173 DGSIILYNF-SSRTQSKICTLQVPPY 197


>U40800-4|AAO91742.1|  763|Caenorhabditis elegans Hypothetical
           protein D2096.12 protein.
          Length = 763

 Score = 27.5 bits (58), Expect = 5.1
 Identities = 15/40 (37%), Positives = 23/40 (57%)
 Frame = +2

Query: 314 YQKLALSQYGSMAFEQIFEAASDEQKLKIMTELSEKSNLL 433
           +QK  L++    + EQ+     ++ K KIM EL+EK  LL
Sbjct: 600 FQK-RLAEIEQRSLEQVRNEKREQWKSKIMDELTEKGELL 638


>DQ360811-1|ABC88648.1| 1737|Caenorhabditis elegans intraflagellar
           transport protein protein.
          Length = 1737

 Score = 27.5 bits (58), Expect = 5.1
 Identities = 12/26 (46%), Positives = 18/26 (69%)
 Frame = -1

Query: 414 DNSVIIFSFCSSLAASKICSNAIDPY 337
           D S+I+++F SS   SKIC+  + PY
Sbjct: 173 DGSIILYNF-SSRTQSKICTLQVPPY 197


>U13875-12|AAA21157.2|  321|Caenorhabditis elegans Hypothetical
           protein C26E6.3 protein.
          Length = 321

 Score = 27.1 bits (57), Expect = 6.7
 Identities = 13/50 (26%), Positives = 26/50 (52%)
 Frame = +2

Query: 50  RLLPIDRVDLTQLDKDYFINVHGSVILQTILDFQRPAKAVSGLLELTSEQ 199
           R  P  +   T +     ++++   I+Q I+D + P K  + LLEL+ ++
Sbjct: 5   RASPATQAQQTAVPSSANLDINTDEIMQWIIDLRDPPKREAALLELSKKR 54


>Z66514-5|CAA91344.1| 1133|Caenorhabditis elegans Hypothetical
           protein F59A2.6 protein.
          Length = 1133

 Score = 26.6 bits (56), Expect = 8.9
 Identities = 25/104 (24%), Positives = 50/104 (48%), Gaps = 5/104 (4%)
 Frame = +2

Query: 140 LDFQRPAKAVSGLLELTS--EQLLVILCDAKGCHVADALCKGQFVGVKARD--KLIWRLK 307
           L F++  K  + +++  S  +Q ++  CDA    V +A    + +  K  D  +   R++
Sbjct: 30  LKFEQADKEKNEMVQQLSRLQQEMLEKCDALQAEVNEAKALREEIQAKYDDVTQKAERIQ 89

Query: 308 GYYQKLA-LSQYGSMAFEQIFEAASDEQKLKIMTELSEKSNLLN 436
           G  ++   + +    AFE   E   +EQ  K M +L+ + N+L+
Sbjct: 90  GELEESKKVLESEKQAFENEKEQEREEQLAKAMEKLNSEQNILD 133


>Z34801-9|CAA84332.1| 1133|Caenorhabditis elegans Hypothetical
           protein F59A2.6 protein.
          Length = 1133

 Score = 26.6 bits (56), Expect = 8.9
 Identities = 25/104 (24%), Positives = 50/104 (48%), Gaps = 5/104 (4%)
 Frame = +2

Query: 140 LDFQRPAKAVSGLLELTS--EQLLVILCDAKGCHVADALCKGQFVGVKARD--KLIWRLK 307
           L F++  K  + +++  S  +Q ++  CDA    V +A    + +  K  D  +   R++
Sbjct: 30  LKFEQADKEKNEMVQQLSRLQQEMLEKCDALQAEVNEAKALREEIQAKYDDVTQKAERIQ 89

Query: 308 GYYQKLA-LSQYGSMAFEQIFEAASDEQKLKIMTELSEKSNLLN 436
           G  ++   + +    AFE   E   +EQ  K M +L+ + N+L+
Sbjct: 90  GELEESKKVLESEKQAFENEKEQEREEQLAKAMEKLNSEQNILD 133


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,644,801
Number of Sequences: 27780
Number of extensions: 211302
Number of successful extensions: 617
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 596
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 617
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 839684522
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)