Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0003_M02
         (468 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    22   2.9  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    21   5.0  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   6.6  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    21   8.7  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                21   8.7  

>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 22.2 bits (45), Expect = 2.9
 Identities = 9/25 (36%), Positives = 13/25 (52%)
 Frame = -2

Query: 215 TGSPGAVPKSAPVDLTPLSLDAENL 141
           +GSP  +PK  P  LT   ++   L
Sbjct: 373 SGSPTELPKHLPTSLTKSKMEVMEL 397


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 21.4 bits (43), Expect = 5.0
 Identities = 7/20 (35%), Positives = 9/20 (45%)
 Frame = +1

Query: 109 CPWFCYIANHFRFSASSESG 168
           CPW C + N   +   S  G
Sbjct: 235 CPWICELTNDAGYVVYSALG 254


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.0 bits (42), Expect = 6.6
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = -1

Query: 81  VRSTLSIGSKRRQTTGKYFC 22
           V  TL I   R + +GKY C
Sbjct: 268 VSGTLIIREARVEDSGKYLC 287


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 20.6 bits (41), Expect = 8.7
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = +1

Query: 22  AEVFPCSLSPLTADR 66
           A + P  +SP TADR
Sbjct: 606 AVIVPPKISPFTADR 620


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 20.6 bits (41), Expect = 8.7
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = +3

Query: 276 KRGINSYGDSKAIIRNW 326
           +RG+    DSKA+ R W
Sbjct: 484 ERGVFKLVDSKAVSRLW 500


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 126,346
Number of Sequences: 438
Number of extensions: 2247
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 12559158
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)