Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0003_M01
         (495 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC13G1.05 |||DUF747 family protein|Schizosaccharomyces pombe|c...    26   2.7  
SPAC1F7.05 |cdc22||ribonucleoside reductase large subunit Cdc22|...    26   2.7  
SPAC1F5.03c |||FAD-dependent oxidoreductase |Schizosaccharomyces...    26   2.7  
SPCC1919.10c |myo52||myosin type V|Schizosaccharomyces pombe|chr...    25   8.3  
SPAC6G9.03c |mug183||histone chaperone Rtt106-like|Schizosacchar...    25   8.3  
SPBC146.06c |||human MTMR15 homolog|Schizosaccharomyces pombe|ch...    25   8.3  

>SPBC13G1.05 |||DUF747 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 649

 Score = 26.2 bits (55), Expect = 2.7
 Identities = 13/44 (29%), Positives = 20/44 (45%), Gaps = 1/44 (2%)
 Frame = -3

Query: 481 LICTVV-SKQQLWLPFSSFQNLHLNMNVPLGTFFPMGREYVSVL 353
           L+C  + +  Q W  F S  ++   +   +GT FP    YV  L
Sbjct: 485 LVCVFIRTSMQTWSMFRSTHSMKQEIAKSIGTIFPTKDNYVYYL 528


>SPAC1F7.05 |cdc22||ribonucleoside reductase large subunit
           Cdc22|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 811

 Score = 26.2 bits (55), Expect = 2.7
 Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
 Frame = -3

Query: 157 GSIRTS--LTEQPSFETPGQD*ISATLSSAKP*R*ANGEYEVQQYHDVARV 11
           G+IR S   TE   + +P +  +    S A P    +G+Y  Q+ HDV +V
Sbjct: 421 GTIRCSNLCTEIVEYSSPDEVAVCNLASVALPTFIKDGKYNFQKLHDVVKV 471


>SPAC1F5.03c |||FAD-dependent oxidoreductase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 382

 Score = 26.2 bits (55), Expect = 2.7
 Identities = 21/81 (25%), Positives = 33/81 (40%), Gaps = 1/81 (1%)
 Frame = +3

Query: 99  QSCPGVSNDGCSVNEVRID-PCNTNHKCVLKQGTVGRMTVNFTPNFDASKVKFGLYWDNG 275
           Q  P +   G  ++ + ID P   N   V  + T    T+   P F A + +  +  +  
Sbjct: 216 QLIPNLRISGARIHSITIDLPIKLNGNAVFSEITYKDGTIA-APEFYAREDELYVCGEFD 274

Query: 276 GDVPFPDLQSDNACEYTTCPL 338
            D P P+L SD   +   C L
Sbjct: 275 -DEPLPELSSDTKVDQDKCAL 294


>SPCC1919.10c |myo52||myosin type V|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1516

 Score = 24.6 bits (51), Expect = 8.3
 Identities = 14/45 (31%), Positives = 22/45 (48%)
 Frame = -3

Query: 493  NDHFLICTVVSKQQLWLPFSSFQNLHLNMNVPLGTFFPMGREYVS 359
            N H L+  V +KQQ +   S+F  L    +  + T F M   ++S
Sbjct: 1192 NTHALLAFVYTKQQAFKHSSAFTLLSTESHESVQTIFEMIESHLS 1236


>SPAC6G9.03c |mug183||histone chaperone
           Rtt106-like|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 352

 Score = 24.6 bits (51), Expect = 8.3
 Identities = 15/46 (32%), Positives = 25/46 (54%), Gaps = 3/46 (6%)
 Frame = -2

Query: 296 VWEGNISAIVPIQA---KFHL*SIEIRCEVNGHAPDRSLFQNAFVI 168
           ++E  I+  +P +    +F L   EIRC ++   P ++  QN FVI
Sbjct: 72  IYENGIAVTLPGEPNLIEFWLPWNEIRCAIHVPCPRKANVQNNFVI 117


>SPBC146.06c |||human MTMR15 homolog|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 703

 Score = 24.6 bits (51), Expect = 8.3
 Identities = 12/41 (29%), Positives = 23/41 (56%)
 Frame = +1

Query: 358 HLRTPYPLGKRCLRVRSCSNVNSGMKRTGARVAVSKQPYRL 480
           HLR  + L +R +R+R C  V++  +    ++ ++  P RL
Sbjct: 443 HLRYYFSLQRRLVRLRKCLKVSNTTELKSMKL-INNNPSRL 482


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,345,162
Number of Sequences: 5004
Number of extensions: 53537
Number of successful extensions: 125
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 124
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 125
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 194131776
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)