Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0003_M01
(495 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_0516 - 18993797-18994141 33 0.13
03_02_0195 - 6325907-6326173,6326996-6327149,6327245-6327336,632... 30 1.2
01_02_0050 + 10649275-10649655,10649807-10649921,10651003-106510... 29 2.1
07_03_1226 - 24998276-24998375,24998728-24998849,24998936-249997... 29 2.7
02_02_0535 - 11292509-11294679,11294971-11295040,11295268-112953... 28 3.6
12_02_0925 - 24398851-24398998,24399478-24399718,24399886-244005... 28 4.7
07_03_1652 - 28409097-28409165,28409788-28409911,28410317-284105... 28 4.7
07_03_0014 - 12428713-12428860,12429340-12429580,12429664-124303... 28 4.7
05_01_0595 + 5344721-5345249,5349183-5349264,5349813-5350507,535... 28 4.7
03_03_0039 - 13986844-13986907,13987219-13987273,13987492-139876... 28 4.7
01_01_1009 + 7992040-7992287,7992747-7993144,7993301-7993441,799... 28 4.7
10_08_0457 + 18076911-18077272,18077356-18077475,18077554-180777... 27 8.3
>07_03_0516 - 18993797-18994141
Length = 114
Score = 33.1 bits (72), Expect = 0.13
Identities = 18/53 (33%), Positives = 26/53 (49%)
Frame = +1
Query: 313 PANTRLVPYRLGNPRHLRTPYPLGKRCLRVRSCSNVNSGMKRTGARVAVSKQP 471
PA L+P+ + P HL +GKR LRV C N + G V +++ P
Sbjct: 8 PATVVLIPFCV--PGHLTPMLEVGKRMLRVGFCGNADDGRGAMSPTVLLAQLP 58
>03_02_0195 -
6325907-6326173,6326996-6327149,6327245-6327336,
6327433-6327534,6328406-6328528,6328635-6328683,
6328759-6328854,6328937-6329276,6329428-6329643,
6329759-6329864,6330144-6330192,6330519-6330792,
6330870-6330960,6331663-6331994,6332084-6332261,
6332815-6332872,6332956-6333089
Length = 886
Score = 29.9 bits (64), Expect = 1.2
Identities = 19/67 (28%), Positives = 29/67 (43%), Gaps = 4/67 (5%)
Frame = +3
Query: 99 QSCPGVSNDGCS--VNEVRIDPC-NTNHKCVLKQGTVGRMTVNFTPNFDASKVKFGLY-W 266
Q PG+ DGC+ C N N KC+ Q + +++ N K F LY +
Sbjct: 120 QDIPGIRQDGCASYFFHKNFKECANENSKCIRWQKSGNPISITLDGNLQGCKEVFVLYAY 179
Query: 267 DNGGDVP 287
+ G+ P
Sbjct: 180 ETDGNNP 186
>01_02_0050 +
10649275-10649655,10649807-10649921,10651003-10651009,
10651035-10651216,10651318-10651530,10651621-10651688,
10651772-10651846,10651961-10652068,10652413-10652530,
10652652-10652793,10653084-10653140,10653281-10653701,
10654064-10654528
Length = 783
Score = 29.1 bits (62), Expect = 2.1
Identities = 17/54 (31%), Positives = 24/54 (44%)
Frame = +3
Query: 102 SCPGVSNDGCSVNEVRIDPCNTNHKCVLKQGTVGRMTVNFTPNFDASKVKFGLY 263
S P DGC+VN N HKC+ V + N+D+S ++ LY
Sbjct: 103 SGPCCQVDGCTVNLSSARDYNKRHKCIYACDIVLLYLLQNAFNWDSSLIRILLY 156
>07_03_1226 -
24998276-24998375,24998728-24998849,24998936-24999702,
25000447-25000618
Length = 386
Score = 28.7 bits (61), Expect = 2.7
Identities = 12/22 (54%), Positives = 14/22 (63%)
Frame = +1
Query: 4 RGTHERHHGIAVLRIRRLPIFR 69
RG RHHG VLR++R P R
Sbjct: 183 RGRGRRHHGELVLRVQRAPHLR 204
>02_02_0535 -
11292509-11294679,11294971-11295040,11295268-11295324,
11298629-11298789,11299123-11299156
Length = 830
Score = 28.3 bits (60), Expect = 3.6
Identities = 16/37 (43%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
Frame = -1
Query: 123 HSKPQ-DRIEFRPLSPR-PNPKDRQTANTKYSNTMMS 19
HS PQ + + L PR P P+ RQ N ++S+ MMS
Sbjct: 326 HSPPQFSQFHAQMLGPRHPPPQGRQMYNPQHSSQMMS 362
>12_02_0925 - 24398851-24398998,24399478-24399718,24399886-24400536,
24400625-24400828,24400902-24401583,24401678-24401934,
24402010-24402704,24403150-24403397
Length = 1041
Score = 27.9 bits (59), Expect = 4.7
Identities = 13/49 (26%), Positives = 25/49 (51%)
Frame = +3
Query: 288 FPDLQSDNACEYTTCPLQAGQPKTLTYSLPIGKKVPKGTFMFKCKFWNE 434
F D+Q D++ ++ ++G P T Y+ P P T++++ W E
Sbjct: 946 FSDIQQDSSSSFSASSFESGYP-TYVYNRPQASDYPATTWVYE---WQE 990
>07_03_1652 - 28409097-28409165,28409788-28409911,28410317-28410557,
28410641-28411375,28411464-28411667,28411741-28412422,
28412517-28412773,28412849-28413543,28414003-28414250
Length = 1084
Score = 27.9 bits (59), Expect = 4.7
Identities = 13/49 (26%), Positives = 25/49 (51%)
Frame = +3
Query: 288 FPDLQSDNACEYTTCPLQAGQPKTLTYSLPIGKKVPKGTFMFKCKFWNE 434
F D+Q D++ ++ ++G P T Y+ P P T++++ W E
Sbjct: 974 FSDIQQDSSSSFSASSFESGYP-TYVYNRPQASDYPATTWVYE---WQE 1018
>07_03_0014 - 12428713-12428860,12429340-12429580,12429664-12430398,
12430487-12430690,12430764-12431445,12431540-12431796,
12431872-12432566,12433012-12433172,12434039-12434383,
12434399-12434631,12434656-12434740
Length = 1261
Score = 27.9 bits (59), Expect = 4.7
Identities = 13/49 (26%), Positives = 25/49 (51%)
Frame = +3
Query: 288 FPDLQSDNACEYTTCPLQAGQPKTLTYSLPIGKKVPKGTFMFKCKFWNE 434
F D+Q D++ ++ ++G P T Y+ P P T++++ W E
Sbjct: 1166 FSDIQQDSSSSFSASSFESGYP-TYVYNRPQASDYPATTWVYE---WQE 1210
>05_01_0595 + 5344721-5345249,5349183-5349264,5349813-5350507,
5350583-5350839,5350934-5351615,5351689-5351892,
5351981-5352715,5352799-5353181
Length = 1188
Score = 27.9 bits (59), Expect = 4.7
Identities = 13/49 (26%), Positives = 25/49 (51%)
Frame = +3
Query: 288 FPDLQSDNACEYTTCPLQAGQPKTLTYSLPIGKKVPKGTFMFKCKFWNE 434
F D+Q D++ ++ ++G P T Y+ P P T++++ W E
Sbjct: 1095 FSDIQQDSSSSFSASSFESGYP-TYVYNRPQASDYPATTWVYE---WQE 1139
>03_03_0039 - 13986844-13986907,13987219-13987273,13987492-13987606,
13987652-13987774,13987962-13988015,13988352-13988411,
13988522-13988584,13988790-13988863,13989177-13989261,
13989376-13989456,13989764-13989856,13990275-13990339,
13990407-13990482,13990570-13990635,13991094-13991153,
13991233-13991322,13991755-13991817,13992502-13992625,
13993031-13993271,13993355-13993624,13993715-13994089,
13994178-13994381,13994455-13995136,13995231-13995279,
13995362-13995488,13995564-13996258,13996718-13996965
Length = 1433
Score = 27.9 bits (59), Expect = 4.7
Identities = 13/49 (26%), Positives = 25/49 (51%)
Frame = +3
Query: 288 FPDLQSDNACEYTTCPLQAGQPKTLTYSLPIGKKVPKGTFMFKCKFWNE 434
F D+Q D++ ++ ++G P T Y+ P P T++++ W E
Sbjct: 917 FSDIQQDSSSSFSASSFESGYP-TYVYNRPQASDYPATTWVYE---WQE 961
>01_01_1009 + 7992040-7992287,7992747-7993144,7993301-7993441,
7993517-7993773,7993868-7994169,7994342-7994580,
7994654-7994857,7994946-7995680,7995764-7996155
Length = 971
Score = 27.9 bits (59), Expect = 4.7
Identities = 13/49 (26%), Positives = 25/49 (51%)
Frame = +3
Query: 288 FPDLQSDNACEYTTCPLQAGQPKTLTYSLPIGKKVPKGTFMFKCKFWNE 434
F D+Q D++ ++ ++G P T Y+ P P T++++ W E
Sbjct: 875 FSDIQQDSSSSFSVSSFESGYP-TYVYNRPQASDYPATTWVYE---WQE 919
>10_08_0457 +
18076911-18077272,18077356-18077475,18077554-18077782,
18077993-18078652,18079224-18079425,18079521-18079611,
18079780-18079837
Length = 573
Score = 27.1 bits (57), Expect = 8.3
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = -2
Query: 455 ATLAPVLFIPEFTFEHERTLRHLFPNG*GVRKCL 354
AT +L EF + H ++HLFP ++K L
Sbjct: 152 ATQVEILTKREFLYTHLAQMKHLFPEAIQIKKIL 185
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,624,619
Number of Sequences: 37544
Number of extensions: 370897
Number of successful extensions: 965
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 942
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 965
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1035514020
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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