Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0003_M01
         (495 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB013288-1|BAA87894.1|  149|Apis mellifera protein kinase C prot...    25   0.58 
AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly pro...    23   1.8  
DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly pro...    22   3.1  
AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cycl...    22   3.1  
AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly pro...    22   4.1  

>AB013288-1|BAA87894.1|  149|Apis mellifera protein kinase C
           protein.
          Length = 149

 Score = 24.6 bits (51), Expect = 0.58
 Identities = 10/27 (37%), Positives = 18/27 (66%)
 Frame = +3

Query: 231 FDASKVKFGLYWDNGGDVPFPDLQSDN 311
           F AS++  GL++ +G  + + DL+ DN
Sbjct: 89  FYASEIAIGLFFLHGRGIVYRDLKLDN 115


>AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly
           protein MRJP5 protein.
          Length = 598

 Score = 23.0 bits (47), Expect = 1.8
 Identities = 11/42 (26%), Positives = 20/42 (47%)
 Frame = +1

Query: 310 MPANTRLVPYRLGNPRHLRTPYPLGKRCLRVRSCSNVNSGMK 435
           +P++  ++  ++GN   L  PYP        + CS + S  K
Sbjct: 90  VPSSLNVISEKIGNGGRLLQPYP-DWSWANYKDCSGIVSAYK 130


>DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly
           protein 9 protein.
          Length = 423

 Score = 22.2 bits (45), Expect = 3.1
 Identities = 10/39 (25%), Positives = 21/39 (53%)
 Frame = +1

Query: 310 MPANTRLVPYRLGNPRHLRTPYPLGKRCLRVRSCSNVNS 426
           +P++  ++  ++GN   L  PYP      + ++CS + S
Sbjct: 87  VPSSLNVISNKIGNGGPLLEPYP-NWSWAKNQNCSGITS 124


>AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cyclase
           alpha 1 subunit protein.
          Length = 699

 Score = 22.2 bits (45), Expect = 3.1
 Identities = 11/41 (26%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
 Frame = -3

Query: 481 LICTVVSKQQLWLPFSSFQNLHLNMNVPLGTFF-PMGREYV 362
           L+C V +++   L    ++ L  + +V + TFF  +G+E +
Sbjct: 108 LLCNVEAEENYNLLEDIYETLSYDCDVDVSTFFDQLGQEVI 148


>AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly
           protein MRJP6 protein.
          Length = 437

 Score = 21.8 bits (44), Expect = 4.1
 Identities = 11/42 (26%), Positives = 20/42 (47%)
 Frame = +1

Query: 310 MPANTRLVPYRLGNPRHLRTPYPLGKRCLRVRSCSNVNSGMK 435
           +P++  ++  ++GN   L  PYP        + CS + S  K
Sbjct: 90  VPSSLNVISEKIGNGGCLLQPYP-DWSWANYKDCSGIVSAYK 130


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 162,706
Number of Sequences: 438
Number of extensions: 3835
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 13667319
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)