Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0003_L24
(565 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr... 29 0.47
SPCC1393.10 |ctr4||copper transporter complex subunit Ctr4 |Schi... 29 0.62
SPAC13D6.01 |pof14||F-box protein Pof14|Schizosaccharomyces pomb... 28 1.1
SPBC1604.14c |shk1|pak1, orb2|PAK-related kinase Shk1|Schizosacc... 26 4.4
SPCC1795.02c ||SPCC895.01|CaCA proton/calcium exchanger|Schizosa... 25 5.8
SPAC110.02 |pds5||cohesin-associated protein Pds5|Schizosaccharo... 25 5.8
SPCC1753.02c |git3||G-protein coupled receptor Git3|Schizosaccha... 25 7.7
SPBC15C4.05 |||ATP-dependent RNA/DNA helicase |Schizosaccharomyc... 25 7.7
SPAC24H6.11c |||sulfate transporter |Schizosaccharomyces pombe|c... 25 7.7
SPAC14C4.05c |mug61||Sad1 interacting factor|Schizosaccharomyces... 25 7.7
>SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1060
Score = 29.1 bits (62), Expect = 0.47
Identities = 20/65 (30%), Positives = 32/65 (49%), Gaps = 1/65 (1%)
Frame = -3
Query: 371 HQSITT-IENNTNFASIIDDYTERTTSQRV*YMIKSPWYPAYSCVIQVCTLLATLRIRWY 195
+ SIT+ ++NN+N + RT+S Y PW P S V L++L + +
Sbjct: 122 NSSITSKLQNNSNLSVTSSANRGRTSSVSSSYDPSFPWGPRMSSVSSGKQHLSSLSLHTH 181
Query: 194 FNHST 180
FN S+
Sbjct: 182 FNPSS 186
>SPCC1393.10 |ctr4||copper transporter complex subunit Ctr4
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 289
Score = 28.7 bits (61), Expect = 0.62
Identities = 17/46 (36%), Positives = 22/46 (47%), Gaps = 5/46 (10%)
Frame = +3
Query: 111 SGLNKTNTAFAFSSMN-----TSVSTIKSTMIEVPPNAESCKQGTY 233
SG+N TN+ + S MN TS+S + T A SCK Y
Sbjct: 78 SGMNMTNSTTSMSGMNMSNSTTSMSGMNMTNTTTTAKASSCKLSMY 123
>SPAC13D6.01 |pof14||F-box protein Pof14|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 431
Score = 27.9 bits (59), Expect = 1.1
Identities = 9/41 (21%), Positives = 26/41 (63%)
Frame = +3
Query: 117 LNKTNTAFAFSSMNTSVSTIKSTMIEVPPNAESCKQGTYLD 239
L+ + ++A ++++ S++ S++I+ +SC + TY++
Sbjct: 269 LDPSYQSYAAKTIHSDTSSLASSIIQTGDGTQSCDESTYIE 309
>SPBC1604.14c |shk1|pak1, orb2|PAK-related kinase
Shk1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 658
Score = 25.8 bits (54), Expect = 4.4
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = +1
Query: 409 FHDKISMSITTTTESNLLSGQVIRVPELE 495
FHD +S S+T + SG+++R P L+
Sbjct: 610 FHDFLSKSLTVNPKQRPSSGELLRHPFLK 638
>SPCC1795.02c ||SPCC895.01|CaCA proton/calcium
exchanger|Schizosaccharomyces pombe|chr 3|||Manual
Length = 412
Score = 25.4 bits (53), Expect = 5.8
Identities = 27/93 (29%), Positives = 46/93 (49%), Gaps = 1/93 (1%)
Frame = -1
Query: 346 ITQISRPLLMIILNVLRLNEYNI*LNHHGILHTPV*SKYVPCLQLSAFGGTSIIVLLIVL 167
+ +SR +I+L V L H + H P S+ + G S I +L ++
Sbjct: 215 LLHVSRGTAVIVLIVYVLLLVFQLKTHKHVCHDP--SEVEEETEPRILGLRSSIAMLAIV 272
Query: 166 TDVFIELNANAVLVLFNPLSDE-NVSLKSFIGL 71
T VF+ L A+ ++ + L +E N+S K+F+GL
Sbjct: 273 T-VFVSLCADYLVGSIDQLVEEVNIS-KTFVGL 303
>SPAC110.02 |pds5||cohesin-associated protein
Pds5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1205
Score = 25.4 bits (53), Expect = 5.8
Identities = 23/70 (32%), Positives = 37/70 (52%), Gaps = 3/70 (4%)
Frame = +3
Query: 12 LFICAYTAPFSVQDILDVFGSPIKDFKETFSSDSGL-NKTNTAF-AFSSMNTSVSTIKST 185
L +CA APF++ + D+F +K SGL N+ +T + + S+S +KS
Sbjct: 79 LRLCAPDAPFTLSQLEDIFQVILKIL-------SGLMNQESTYYPQIYEILESLSNVKSA 131
Query: 186 MIEVP-PNAE 212
++ V PNAE
Sbjct: 132 VLIVDLPNAE 141
>SPCC1753.02c |git3||G-protein coupled receptor
Git3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 466
Score = 25.0 bits (52), Expect = 7.7
Identities = 14/38 (36%), Positives = 23/38 (60%), Gaps = 2/38 (5%)
Frame = -1
Query: 187 IVLLIVLTD--VFIELNANAVLVLFNPLSDENVSLKSF 80
+++L+ +TD +FI + NA+LVLF + E L F
Sbjct: 105 LLVLVRMTDYWIFINILHNALLVLFPHVDTERRGLYRF 142
>SPBC15C4.05 |||ATP-dependent RNA/DNA helicase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1428
Score = 25.0 bits (52), Expect = 7.7
Identities = 19/58 (32%), Positives = 27/58 (46%), Gaps = 2/58 (3%)
Frame = +3
Query: 81 KDFKETFSSDSGLNKTNTAFAFSSMNTSV--STIKSTMIEVPPNAESCKQGTYLDHTG 248
K FKE + S K NT A + + S IKS +E P +A + K +D+ G
Sbjct: 540 KSFKEVYGKFSA-EKQNTDLAEDAKISEKLDSIIKSKELETPTSATTSKLMAPMDNIG 596
>SPAC24H6.11c |||sulfate transporter |Schizosaccharomyces pombe|chr
1|||Manual
Length = 958
Score = 25.0 bits (52), Expect = 7.7
Identities = 11/40 (27%), Positives = 24/40 (60%)
Frame = +3
Query: 258 IPW*FNHILYSLRRSTFSIIINNGREICVIFNSGYALVHV 377
+PW + L+SLR + +S ++ E+C + + + ++HV
Sbjct: 400 VPWYHFYSLFSLRDTDWSALLATVPEMCAL--TFFGILHV 437
>SPAC14C4.05c |mug61||Sad1 interacting factor|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 844
Score = 25.0 bits (52), Expect = 7.7
Identities = 12/34 (35%), Positives = 19/34 (55%)
Frame = -3
Query: 410 KLNATPASAWNNMHQSITTIENNTNFASIIDDYT 309
+LNA + N+M S + ++N TN S +D T
Sbjct: 165 ELNAAVVNLDNSMESSFSIVQNLTNKDSSVDTAT 198
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,130,298
Number of Sequences: 5004
Number of extensions: 38619
Number of successful extensions: 118
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 114
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 118
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 238029836
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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