Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0003_L24
         (565 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0465 + 25427065-25427113,25428099-25428227,25428387-254284...    29   2.6  
06_03_1496 - 30567968-30568210,30568345-30568513,30568635-305687...    28   5.9  
10_08_0507 + 18401266-18401341,18401448-18401633,18401918-184019...    27   7.8  
08_01_0519 - 4518256-4519623,4520840-4521230,4521313-4521525,452...    27   7.8  
01_05_0708 + 24477228-24477375,24477823-24477905,24478233-244783...    27   7.8  

>04_04_0465 +
           25427065-25427113,25428099-25428227,25428387-25428479,
           25428681-25428953,25429037-25429288,25429735-25430118,
           25430243-25430483,25431986-25432736
          Length = 723

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 13/38 (34%), Positives = 21/38 (55%)
 Frame = +3

Query: 102 SSDSGLNKTNTAFAFSSMNTSVSTIKSTMIEVPPNAES 215
           S+ S   KT    +FSSM +S ++  ST+   PP  ++
Sbjct: 257 SNSSATRKTGMRSSFSSMTSSTASFVSTIATCPPTVKT 294


>06_03_1496 - 30567968-30568210,30568345-30568513,30568635-30568736,
            30569087-30571855,30572402-30572430,30572546-30572659,
            30572735-30572846,30574730-30574845,30574928-30575068,
            30575121-30575243,30575346-30575478,30575842-30575972,
            30576065-30576300,30577073-30577376
          Length = 1573

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 13/33 (39%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
 Frame = +3

Query: 18   IC-AYTAPFSVQDILDVFGSPIKDFKETFSSDS 113
            +C AY A   V+D+  + G P+ DF++  SS S
Sbjct: 1205 VCDAYRAQQRVEDVQVIIGRPLADFEQFISSAS 1237


>10_08_0507 +
           18401266-18401341,18401448-18401633,18401918-18401953,
           18402244-18402650,18402998-18403099,18403206-18403433
          Length = 344

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 17/72 (23%), Positives = 32/72 (44%)
 Frame = -3

Query: 338 NFASIIDDYTERTTSQRV*YMIKSPWYPAYSCVIQVCTLLATLRIRWYFNHSTLNCTNRC 159
           N  S +D YT  T  +   ++ K+  +  +  +     LL  + +R   + S L+C  RC
Sbjct: 183 NHQSFLDIYTLLTLGRCFKFISKTSIF-MFPIIGWAMYLLGVIPLRRMDSRSQLDCLKRC 241

Query: 158 IHRTKRKCGISF 123
           +   K+   + F
Sbjct: 242 VDLVKKGASVFF 253


>08_01_0519 - 4518256-4519623,4520840-4521230,4521313-4521525,
            4521632-4521723,4522226-4522342,4522641-4522704,
            4523175-4523228,4523579-4523666,4523788-4524023,
            4525258-4525478,4525634-4525827,4525938-4525995,
            4526771-4526824,4526851-4527473,4527580-4527640,
            4528417-4528590,4528803-4529063,4529201-4529320,
            4529388-4530022,4530062-4530828,4530915-4531012,
            4531101-4531155,4531230-4531318
          Length = 2010

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 16/65 (24%), Positives = 32/65 (49%)
 Frame = -3

Query: 353  IENNTNFASIIDDYTERTTSQRV*YMIKSPWYPAYSCVIQVCTLLATLRIRWYFNHSTLN 174
            IE+  +F   + D +E +T  +     K P Y     V + C+L+A  +++ + +  +L+
Sbjct: 897  IESTVDFDRQLYDGSEVSTKSKKKKKSKHPGYKTPQSVAESCSLIAG-KVKIFMSTLSLS 955

Query: 173  CTNRC 159
            C   C
Sbjct: 956  CLQCC 960


>01_05_0708 +
           24477228-24477375,24477823-24477905,24478233-24478391,
           24478882-24478992,24479098-24479164,24479269-24479537
          Length = 278

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 28/79 (35%), Positives = 36/79 (45%), Gaps = 5/79 (6%)
 Frame = +1

Query: 325 MDAKFVLFSIVVMLWCMLFQAEAGVAFNFHDKISMSITTTTESNLLSGQVIRVP---ELE 495
           ++A F L     +L    F A  GVA NFH  I  +  +TT  NLL+     VP    L 
Sbjct: 43  VNAPFGLGQYANLLRAQAF-ASRGVALNFHQLIRNAGISTTR-NLLAADDAMVPVSSPLT 100

Query: 496 CPL--GQRRDSLGNCRNRL 546
            PL  G++ D  G    RL
Sbjct: 101 PPLGDGEQTDKKGAIVKRL 119


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,212,683
Number of Sequences: 37544
Number of extensions: 226706
Number of successful extensions: 572
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 566
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 572
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1293275844
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)