Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0003_L24
         (565 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U97190-1|AAB52366.2|  495|Caenorhabditis elegans Cop-9 signaloso...    29   2.3  
U43283-2|AAC69020.1|  205|Caenorhabditis elegans Rab family prot...    29   3.1  
Z12017-9|CAA78053.1|  537|Caenorhabditis elegans Hypothetical pr...    27   9.3  
Z11505-11|CAA77591.1|  537|Caenorhabditis elegans Hypothetical p...    27   9.3  
U68254-1|AAB16969.1|   67|Caenorhabditis elegans rab6-like protein.    27   9.3  

>U97190-1|AAB52366.2|  495|Caenorhabditis elegans Cop-9 signalosome
           subunit protein 2 protein.
          Length = 495

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 12/46 (26%), Positives = 26/46 (56%)
 Frame = +3

Query: 102 SSDSGLNKTNTAFAFSSMNTSVSTIKSTMIEVPPNAESCKQGTYLD 239
           + D G  K+++    SS  ++ +++ S++++ PP   SC Q   +D
Sbjct: 428 AGDQGTTKSDSKPGTSSEPSTTTSVTSSILQGPPATSSCHQELSMD 473


>U43283-2|AAC69020.1|  205|Caenorhabditis elegans Rab family protein
           6.2 protein.
          Length = 205

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 16/40 (40%), Positives = 23/40 (57%), Gaps = 3/40 (7%)
 Frame = +3

Query: 66  FGSPIKDFKETFSSDSGLNKTN--TAFAFSSM-NTSVSTI 176
           FG+P+K FK  F  +  + KT+  T F + S  NT  +TI
Sbjct: 4   FGNPLKKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATI 43


>Z12017-9|CAA78053.1|  537|Caenorhabditis elegans Hypothetical
           protein R08D7.7 protein.
          Length = 537

 Score = 27.1 bits (57), Expect = 9.3
 Identities = 16/59 (27%), Positives = 30/59 (50%), Gaps = 3/59 (5%)
 Frame = -1

Query: 196 TSIIVLLIVLTDVFIELNANAVLVLFNPLSDENVSLKSFIGL-PNTSKMS--CTENGAV 29
           +S+  L ++ TD+ I L  +  +  F P  + N+    F    PN+  M+  C +NG++
Sbjct: 277 SSLAGLSLLPTDIGISLGTSDTVFFFTPTFEPNIDAHVFSHFAPNSGYMAMVCFKNGSL 335


>Z11505-11|CAA77591.1|  537|Caenorhabditis elegans Hypothetical
           protein R08D7.7 protein.
          Length = 537

 Score = 27.1 bits (57), Expect = 9.3
 Identities = 16/59 (27%), Positives = 30/59 (50%), Gaps = 3/59 (5%)
 Frame = -1

Query: 196 TSIIVLLIVLTDVFIELNANAVLVLFNPLSDENVSLKSFIGL-PNTSKMS--CTENGAV 29
           +S+  L ++ TD+ I L  +  +  F P  + N+    F    PN+  M+  C +NG++
Sbjct: 277 SSLAGLSLLPTDIGISLGTSDTVFFFTPTFEPNIDAHVFSHFAPNSGYMAMVCFKNGSL 335


>U68254-1|AAB16969.1|   67|Caenorhabditis elegans rab6-like protein.
          Length = 67

 Score = 27.1 bits (57), Expect = 9.3
 Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 3/40 (7%)
 Frame = +3

Query: 66  FGSPIKDFKETFSSDSGLNKTN--TAFAFSSM-NTSVSTI 176
           FG+P+K F+  F  +  + KT+  T F + S  NT  +TI
Sbjct: 4   FGNPLKKFELVFLGEQSVGKTSLITRFMYDSFDNTYQATI 43


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,857,270
Number of Sequences: 27780
Number of extensions: 217988
Number of successful extensions: 638
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 601
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 638
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1166125180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)