Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0003_L24
         (565 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              25   0.53 
AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase ...    23   1.6  
AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     23   2.8  
AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic ac...    21   6.5  
DQ288392-1|ABC41342.1|  120|Apis mellifera nanos protein.              21   8.6  

>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 25.0 bits (52), Expect = 0.53
 Identities = 15/37 (40%), Positives = 19/37 (51%)
 Frame = +3

Query: 90  KETFSSDSGLNKTNTAFAFSSMNTSVSTIKSTMIEVP 200
           K T  SDS L       AF S +TS++ I   + EVP
Sbjct: 843 KRTERSDSALFTCVATNAFGSDDTSINMIVQEVPEVP 879


>AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase
           protein.
          Length = 510

 Score = 23.4 bits (48), Expect = 1.6
 Identities = 8/21 (38%), Positives = 12/21 (57%)
 Frame = -3

Query: 275 IKSPWYPAYSCVIQVCTLLAT 213
           IK PW+P ++  +  C  L T
Sbjct: 169 IKDPWFPRHASDLDNCNHLMT 189


>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 22.6 bits (46), Expect = 2.8
 Identities = 12/25 (48%), Positives = 15/25 (60%), Gaps = 2/25 (8%)
 Frame = -3

Query: 407 LNATPASAW--NNMHQSITTIENNT 339
           +NA P++    NNM  S T I NNT
Sbjct: 560 INAEPSNIEESNNMTDSFTRIANNT 584


>AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic
           acetylcholine Apisa7-2 subunit protein.
          Length = 461

 Score = 21.4 bits (43), Expect = 6.5
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = +3

Query: 339 CVIFNSGYALVHVVPSRS 392
           C++ NS   LV  VPS S
Sbjct: 224 CILINSVALLVFYVPSES 241


>DQ288392-1|ABC41342.1|  120|Apis mellifera nanos protein.
          Length = 120

 Score = 21.0 bits (42), Expect = 8.6
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = -3

Query: 515 RLCPRGHSSSGTLIT 471
           + CP+G  + GTL T
Sbjct: 89  KYCPKGTKNPGTLAT 103


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 142,880
Number of Sequences: 438
Number of extensions: 2716
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 16317903
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)