Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0003_L23
(573 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC576.11 |rpl15||60S ribosomal protein L15|Schizosaccharomyces... 234 6e-63
SPAC1783.08c |rpl1502|rpl15-2|60S ribosomal protein L15b|Schizos... 233 1e-62
SPCC1020.02 |spc7||kinetochore protein Spc7|Schizosaccharomyces ... 27 1.5
SPCC1393.07c |mug4||sequence orphan|Schizosaccharomyces pombe|ch... 27 2.0
SPAC3G9.12 |peg1|cls1|CLASP family microtubule-associated protei... 27 2.6
SPBC16E9.17c |rem1||meiosis-specific cyclin Rem1|Schizosaccharom... 26 4.5
SPAC16E8.13 |||ubiquitin-protein ligase E3 |Schizosaccharomyces ... 26 4.5
SPCC1840.12 ||SPCC965.02|OPT oligopeptide transporter family|Sch... 25 6.0
>SPCC576.11 |rpl15||60S ribosomal protein L15|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 201
Score = 234 bits (573), Expect = 6e-63
Identities = 108/181 (59%), Positives = 127/181 (70%)
Frame = +3
Query: 30 MGAYRYIQELYRKKLSDVMRFLLRIRVWQYRQLTRMHRAPRPTRPDKARRLGYRAKQGYX 209
MGAY+Y++EL +KK SDV FL R+R W+YRQ+ +HRA RP+RPDKARRLGY+AKQGY
Sbjct: 1 MGAYKYLEELAKKKQSDVNLFLSRVRAWEYRQMNVIHRASRPSRPDKARRLGYKAKQGYV 60
Query: 210 XXXXXXXXXXXXXPVPNGATYGKPKSHGVNQLKPTRNLQSIAEEXXXXXXXXXXXXNSYW 389
PVP G TYGKP GVN LK R+ + AEE NSYW
Sbjct: 61 IYRIRVRRGGRKRPVPKGQTYGKPVHQGVNHLKYQRSARCTAEERVGRYCSNLRVLNSYW 120
Query: 390 VAQDSSYKYFEVILIDPSHNAIPRDPKINWIVNAVHKHREMRGLTSAGKSSRGLGHGHRF 569
V QD++YK+FEVIL+DPSH AI RDP+INWIVN VHKHRE RGLTS GK SRG+G GHRF
Sbjct: 121 VNQDATYKFFEVILVDPSHKAIRRDPRINWIVNPVHKHRESRGLTSIGKKSRGIGKGHRF 180
Query: 570 S 572
+
Sbjct: 181 N 181
>SPAC1783.08c |rpl1502|rpl15-2|60S ribosomal protein
L15b|Schizosaccharomyces pombe|chr 1|||Manual
Length = 201
Score = 233 bits (570), Expect = 1e-62
Identities = 107/181 (59%), Positives = 127/181 (70%)
Frame = +3
Query: 30 MGAYRYIQELYRKKLSDVMRFLLRIRVWQYRQLTRMHRAPRPTRPDKARRLGYRAKQGYX 209
MGAY+Y++EL +KK SDV FL R+R W+YRQ+ +HRA RP+RPDKARRLGY+AKQGY
Sbjct: 1 MGAYKYLEELAKKKQSDVNLFLSRVRAWEYRQMNVIHRASRPSRPDKARRLGYKAKQGYV 60
Query: 210 XXXXXXXXXXXXXPVPNGATYGKPKSHGVNQLKPTRNLQSIAEEXXXXXXXXXXXXNSYW 389
PVP G TYGKP GVN LK R+ + AEE NSYW
Sbjct: 61 IYRIRVRRGGRKRPVPKGQTYGKPVHQGVNHLKYQRSARCTAEERVGRYCSNLRVLNSYW 120
Query: 390 VAQDSSYKYFEVILIDPSHNAIPRDPKINWIVNAVHKHREMRGLTSAGKSSRGLGHGHRF 569
V QD++YK+FEVIL+DPSH AI RDP+INWIVN VHKHRE RGLTS GK SRG+G GHR+
Sbjct: 121 VNQDATYKFFEVILVDPSHKAIRRDPRINWIVNPVHKHRESRGLTSIGKKSRGIGKGHRY 180
Query: 570 S 572
+
Sbjct: 181 N 181
>SPCC1020.02 |spc7||kinetochore protein Spc7|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1364
Score = 27.5 bits (58), Expect = 1.5
Identities = 12/40 (30%), Positives = 20/40 (50%)
Frame = -2
Query: 569 EAMSMPETTRAFPCGRQTAHLAMFVYRIHDPIDLRITGNS 450
E M T+ FPC T+HL + + + + +I GN+
Sbjct: 522 EEQPMELTSTVFPCENSTSHLEVEEAAMDETVAFQIRGNN 561
>SPCC1393.07c |mug4||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 845
Score = 27.1 bits (57), Expect = 2.0
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = -2
Query: 116 LPHSYTQEKSHNIAQLFPIQLLYISVRAH 30
LPHS EKS N+ Q +QL ++++ H
Sbjct: 761 LPHSCEMEKSLNVLQHKVLQLQAVNMKLH 789
>SPAC3G9.12 |peg1|cls1|CLASP family microtubule-associated
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1462
Score = 26.6 bits (56), Expect = 2.6
Identities = 12/35 (34%), Positives = 18/35 (51%)
Frame = +3
Query: 396 QDSSYKYFEVILIDPSHNAIPRDPKINWIVNAVHK 500
+ S KY E P H+ + PK WI++ +HK
Sbjct: 1182 KSESNKYQEQAYSTPLHHTLNVLPKNKWILSRMHK 1216
>SPBC16E9.17c |rem1||meiosis-specific cyclin
Rem1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 402
Score = 25.8 bits (54), Expect = 4.5
Identities = 18/65 (27%), Positives = 26/65 (40%)
Frame = +2
Query: 104 KSVAISPVDSYAPRSQAHEARQGEKAWIPCQARLCYLQNPRAPWWP*TPSAQWSYLRQTQ 283
K VA+ + +Y +S K W+ Q R LQN +P PS W + +
Sbjct: 6 KRVALQEISNYVSKSL------NVKGWVNAQVREISLQNGCSPSDKHFPSQSWHGISSIE 59
Query: 284 EPWCQ 298
E Q
Sbjct: 60 ESQIQ 64
>SPAC16E8.13 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 547
Score = 25.8 bits (54), Expect = 4.5
Identities = 14/28 (50%), Positives = 17/28 (60%)
Frame = -2
Query: 134 TSQLAILPHSYTQEKSHNIAQLFPIQLL 51
+SQL L H+Y +EKS N L IQ L
Sbjct: 433 SSQLEHLKHNYEEEKSMNENLLVRIQTL 460
>SPCC1840.12 ||SPCC965.02|OPT oligopeptide transporter
family|Schizosaccharomyces pombe|chr 3|||Manual
Length = 791
Score = 25.4 bits (53), Expect = 6.0
Identities = 9/26 (34%), Positives = 17/26 (65%)
Frame = +1
Query: 313 LATCSLLLRSVLVAGVVVYACLIHTG 390
L T + + V +AG+ +Y C+++TG
Sbjct: 730 LITAAAMDCGVAIAGLFIYFCVVYTG 755
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,378,130
Number of Sequences: 5004
Number of extensions: 45160
Number of successful extensions: 112
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 111
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 112
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 244081442
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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