Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0003_L23
(573 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_05_0228 - 22137771-22138016,22138109-22138306,22138852-221390... 221 4e-58
05_03_0257 + 11145558-11145876,11148181-11148347,11149114-111493... 219 2e-57
06_02_0082 + 11536799-11537554,11538210-11538334,11538507-11538687 31 0.001
04_03_0563 - 17195605-17196681 29 2.0
11_02_0075 - 8051057-8051815 29 2.6
01_06_1684 + 39151412-39151702,39152410-39152548,39152926-391530... 29 2.6
07_01_0763 + 5854986-5855000,5855266-5855775,5855899-5856159 28 4.6
07_01_0760 - 5844349-5844401,5844521-5844665,5844782-5845297,584... 28 4.6
08_01_0413 - 3679887-3681254 28 6.1
01_01_1084 - 8521796-8522389,8522503-8522983,8523084-8523190 27 8.0
>03_05_0228 -
22137771-22138016,22138109-22138306,22138852-22139018,
22139129-22139132
Length = 204
Score = 221 bits (539), Expect = 4e-58
Identities = 102/179 (56%), Positives = 123/179 (68%), Gaps = 1/179 (0%)
Frame = +3
Query: 30 MGAYRYIQELYRKKLSDVMRFLLRIRVWQYRQLTRMHRAPRPTRPDKARRLGYRAKQGYX 209
MGAY+Y+ EL+R+K SDVMRF+ R+R W+YRQ + R RPTRPDKARRLGY+AKQGY
Sbjct: 1 MGAYKYVSELWRRKQSDVMRFVQRVRCWEYRQQPAIVRLTRPTRPDKARRLGYKAKQGYV 60
Query: 210 XXXXXXXXXXXXXPVPNGATYGKPKSHGVNQLKPTRNLQSIAEEXXXXXXXXXXXXNSYW 389
PVP G YGKPK G+ QLK RN +S+AEE NSYW
Sbjct: 61 VYRVRVRRGGRKRPVPKGIVYGKPKHQGITQLKFQRNKRSVAEERAGRKLGGLRVLNSYW 120
Query: 390 VAQDSSYKYFEVILIDPSHNAIPRDPKINWIVNAVHKHREMRGLTSAGKSSRGL-GHGH 563
V +DS+YKYFE+IL+D +H+AI DP+INW+ VHKHRE+RGLTSAGK RGL G GH
Sbjct: 121 VNEDSTYKYFEIILVDVAHSAIRNDPRINWLCKPVHKHRELRGLTSAGKKYRGLRGKGH 179
>05_03_0257 +
11145558-11145876,11148181-11148347,11149114-11149311,
11149405-11149650
Length = 309
Score = 219 bits (534), Expect = 2e-57
Identities = 101/178 (56%), Positives = 122/178 (68%), Gaps = 1/178 (0%)
Frame = +3
Query: 33 GAYRYIQELYRKKLSDVMRFLLRIRVWQYRQLTRMHRAPRPTRPDKARRLGYRAKQGYXX 212
GAY+Y+ EL+R+K SDVMRF+ R+R W+YRQ + R RPTRPDKARRLGY+AKQGY
Sbjct: 107 GAYKYVSELWRRKQSDVMRFVQRVRCWEYRQQPAIVRLTRPTRPDKARRLGYKAKQGYVV 166
Query: 213 XXXXXXXXXXXXPVPNGATYGKPKSHGVNQLKPTRNLQSIAEEXXXXXXXXXXXXNSYWV 392
PVP G YGKPK G+ QLK RN +S+AEE NSYWV
Sbjct: 167 YRVRVRRGGRKRPVPKGIVYGKPKHQGITQLKFQRNKRSVAEERAGRKLGGLRVLNSYWV 226
Query: 393 AQDSSYKYFEVILIDPSHNAIPRDPKINWIVNAVHKHREMRGLTSAGKSSRGL-GHGH 563
+DS+YKYFE+IL+D +H+AI DP+INW+ VHKHRE+RGLTSAGK RGL G GH
Sbjct: 227 NEDSTYKYFEIILVDVAHSAIRNDPRINWLCKPVHKHRELRGLTSAGKKYRGLRGKGH 284
>06_02_0082 + 11536799-11537554,11538210-11538334,11538507-11538687
Length = 353
Score = 30.7 bits (66), Expect(2) = 0.001
Identities = 13/24 (54%), Positives = 14/24 (58%)
Frame = +3
Query: 249 PVPNGATYGKPKSHGVNQLKPTRN 320
PV G Y KPK G+ QLK RN
Sbjct: 269 PVHKGIVYSKPKHQGITQLKFQRN 292
Score = 28.7 bits (61), Expect(2) = 0.001
Identities = 11/18 (61%), Positives = 15/18 (83%)
Frame = +3
Query: 417 FEVILIDPSHNAIPRDPK 470
FE+IL+D +H+AI DPK
Sbjct: 299 FEIILVDVAHSAIRDDPK 316
>04_03_0563 - 17195605-17196681
Length = 358
Score = 29.5 bits (63), Expect = 2.0
Identities = 14/37 (37%), Positives = 19/37 (51%)
Frame = +1
Query: 133 VCTALPGPRGQTRREGLDTVPSKVMLSSESACAVVAV 243
V ALP PR T+P+ V++ S S C +V V
Sbjct: 147 VVEALPSPRIMAVHMPFSTLPASVVVDSSSGCKIVYV 183
>11_02_0075 - 8051057-8051815
Length = 252
Score = 29.1 bits (62), Expect = 2.6
Identities = 16/50 (32%), Positives = 20/50 (40%)
Frame = +2
Query: 218 NPRAPWWP*TPSAQWSYLRQTQEPWCQPTETHSQPAVYC*GACWSPVWWS 367
+PR P P WS+L + PW T H P G C WW+
Sbjct: 3 HPRLRAGPARPDGWWSFLGGRRSPWA-GTARHEVPI----GPCRPDGWWA 47
>01_06_1684 +
39151412-39151702,39152410-39152548,39152926-39153040,
39153232-39153332,39153688-39153809,39153885-39153976,
39155288-39155393,39155477-39155631,39155904-39156031,
39156349-39156479,39157171-39157268,39157371-39158162,
39158472-39158523
Length = 773
Score = 29.1 bits (62), Expect = 2.6
Identities = 18/54 (33%), Positives = 26/54 (48%)
Frame = -2
Query: 317 ASGFQLVDTMALGFAVGSSIGHWAFTATTAHADSEDNITLLGTVSKPSRLVWPR 156
AS +LV + GFA G++ A A AH DS+ ++ L + L W R
Sbjct: 55 ASAARLVASAVAGFAQGAAAAAIAAGAIGAHVDSDRDLRHLSRLRYKRWLWWTR 108
>07_01_0763 + 5854986-5855000,5855266-5855775,5855899-5856159
Length = 261
Score = 28.3 bits (60), Expect = 4.6
Identities = 19/55 (34%), Positives = 24/55 (43%), Gaps = 2/55 (3%)
Frame = -2
Query: 299 VDTMALGFAVGSSIGHWAFTATTAHADSE--DNITLLGTVSKPSRLVWPRGPGSA 141
V M G G SIG + AH ++ DN+ L GT + W G GSA
Sbjct: 88 VKNMVCGPGHGISIGSLGDHNSEAHVNNVTVDNVRLYGTTNGARIKTWQGGKGSA 142
>07_01_0760 -
5844349-5844401,5844521-5844665,5844782-5845297,
5845405-5845596,5845686-5845817,5845926-5846069
Length = 393
Score = 28.3 bits (60), Expect = 4.6
Identities = 19/55 (34%), Positives = 24/55 (43%), Gaps = 2/55 (3%)
Frame = -2
Query: 299 VDTMALGFAVGSSIGHWAFTATTAHADSE--DNITLLGTVSKPSRLVWPRGPGSA 141
V M G G SIG + AH ++ DN+ L GT + W G GSA
Sbjct: 241 VKNMVCGPGHGISIGSLGDHNSEAHVNNVTVDNVRLYGTANGARIKTWQGGKGSA 295
>08_01_0413 - 3679887-3681254
Length = 455
Score = 27.9 bits (59), Expect = 6.1
Identities = 15/50 (30%), Positives = 21/50 (42%)
Frame = +1
Query: 139 TALPGPRGQTRREGLDTVPSKVMLSSESACAVVAVNAQCPMELPTANPRA 288
++ P PRG+ RR+ PS + A Q P+ P AN A
Sbjct: 355 SSAPRPRGRGRRQARQDAPSAPATQQQVVNADAGSGNQAPLPPPDANGAA 404
>01_01_1084 - 8521796-8522389,8522503-8522983,8523084-8523190
Length = 393
Score = 27.5 bits (58), Expect = 8.0
Identities = 16/50 (32%), Positives = 26/50 (52%)
Frame = -2
Query: 302 LVDTMALGFAVGSSIGHWAFTATTAHADSEDNITLLGTVSKPSRLVWPRG 153
LV +G V S GHW ++ + AD+E +L + + +RL+ RG
Sbjct: 303 LVFHSRMGLCVQISRGHWLWSVWESIADAELAADILHSSATSTRLIPIRG 352
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,342,571
Number of Sequences: 37544
Number of extensions: 331397
Number of successful extensions: 940
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 919
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 940
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1328870592
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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