Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0003_L23
         (573 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U88168-3|AAC24397.1|  204|Caenorhabditis elegans Ribosomal prote...   235   2e-62
Z98877-5|CAD56616.1|  731|Caenorhabditis elegans Hypothetical pr...    31   0.77 
Z98877-4|CAB54473.2|  796|Caenorhabditis elegans Hypothetical pr...    31   0.77 
U80438-4|AAB37634.2| 1415|Caenorhabditis elegans Uncoordinated p...    30   1.3  
U70618-1|AAB17088.1| 1415|Caenorhabditis elegans unc-40 protein.       30   1.3  
Z70213-9|CAA94177.1| 1520|Caenorhabditis elegans Hypothetical pr...    28   4.1  
Z49069-5|CAA88867.1| 1520|Caenorhabditis elegans Hypothetical pr...    28   4.1  
Z30317-5|CAA82971.4| 1890|Caenorhabditis elegans Hypothetical pr...    28   5.4  
U80440-1|AAK21472.1| 4568|Caenorhabditis elegans Dynein heavy ch...    27   7.2  
L33260-1|AAC37251.1| 4568|Caenorhabditis elegans dynein heavy ch...    27   7.2  
Z46828-1|CAA86856.1|  542|Caenorhabditis elegans Hypothetical pr...    27   9.5  
U55857-5|AAA98031.1|  602|Caenorhabditis elegans Hypothetical pr...    27   9.5  

>U88168-3|AAC24397.1|  204|Caenorhabditis elegans Ribosomal protein,
           large subunitprotein 15 protein.
          Length = 204

 Score =  235 bits (575), Expect = 2e-62
 Identities = 106/181 (58%), Positives = 129/181 (71%)
 Frame = +3

Query: 30  MGAYRYIQELYRKKLSDVMRFLLRIRVWQYRQLTRMHRAPRPTRPDKARRLGYRAKQGYX 209
           MGAY+Y+QE++RKK SD +R+LLRIR W YRQL+ +HR PRPTRP+KARRLGYRAKQG+ 
Sbjct: 1   MGAYKYMQEIWRKKQSDALRYLLRIRTWHYRQLSAVHRVPRPTRPEKARRLGYRAKQGFV 60

Query: 210 XXXXXXXXXXXXXPVPNGATYGKPKSHGVNQLKPTRNLQSIAEEXXXXXXXXXXXXNSYW 389
                        PV  G TYGKPK+HGVN+LK  ++ Q++AE             NSYW
Sbjct: 61  VYRVRVRRGNRKRPVCKGQTYGKPKTHGVNELKNAKSKQAVAEGRAGRRLGSLRVLNSYW 120

Query: 390 VAQDSSYKYFEVILIDPSHNAIPRDPKINWIVNAVHKHREMRGLTSAGKSSRGLGHGHRF 569
           VA+DS+YK++EV+LIDP H AI R+P   WI   VHKHRE RGLTSAG+ SRGLG G RF
Sbjct: 121 VAEDSTYKFYEVVLIDPFHKAIRRNPDTQWITKPVHKHREQRGLTSAGRKSRGLGKGWRF 180

Query: 570 S 572
           S
Sbjct: 181 S 181


>Z98877-5|CAD56616.1|  731|Caenorhabditis elegans Hypothetical
           protein Y69H2.3c protein.
          Length = 731

 Score = 30.7 bits (66), Expect = 0.77
 Identities = 19/64 (29%), Positives = 29/64 (45%)
 Frame = +1

Query: 136 CTALPGPRGQTRREGLDTVPSKVMLSSESACAVVAVNAQCPMELPTANPRAMVSTN*NPL 315
           C  + G +  T R+G D V  +     E    V  V A CPM++   +   + ST   P 
Sbjct: 432 CVPMNGNQNSTARQGCDVVRCRANEVCEEQ-KVDCVKAPCPMQVACVSIVHLNSTTPAPG 490

Query: 316 ATCS 327
           +TC+
Sbjct: 491 STCA 494


>Z98877-4|CAB54473.2|  796|Caenorhabditis elegans Hypothetical
           protein Y69H2.3b protein.
          Length = 796

 Score = 30.7 bits (66), Expect = 0.77
 Identities = 19/64 (29%), Positives = 29/64 (45%)
 Frame = +1

Query: 136 CTALPGPRGQTRREGLDTVPSKVMLSSESACAVVAVNAQCPMELPTANPRAMVSTN*NPL 315
           C  + G +  T R+G D V  +     E    V  V A CPM++   +   + ST   P 
Sbjct: 497 CVPMNGNQNSTARQGCDVVRCRANEVCEEQ-KVDCVKAPCPMQVACVSIVHLNSTTPAPG 555

Query: 316 ATCS 327
           +TC+
Sbjct: 556 STCA 559


>U80438-4|AAB37634.2| 1415|Caenorhabditis elegans Uncoordinated
            protein 40 protein.
          Length = 1415

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 19/58 (32%), Positives = 26/58 (44%), Gaps = 1/58 (1%)
 Frame = +1

Query: 157  RGQTRREGLDTVPSKVMLSSESACAVVAVNA-QCPMELPTANPRAMVSTN*NPLATCS 327
            R  T+  G    P     SS S   ++A    Q P+   TA PR  V+   +P A+CS
Sbjct: 1279 RSFTQLAGATPPPPHSAASSSSRPTIIAAGGRQVPVGRATAQPRVNVANIYSPFASCS 1336


>U70618-1|AAB17088.1| 1415|Caenorhabditis elegans unc-40 protein.
          Length = 1415

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 19/58 (32%), Positives = 26/58 (44%), Gaps = 1/58 (1%)
 Frame = +1

Query: 157  RGQTRREGLDTVPSKVMLSSESACAVVAVNA-QCPMELPTANPRAMVSTN*NPLATCS 327
            R  T+  G    P     SS S   ++A    Q P+   TA PR  V+   +P A+CS
Sbjct: 1279 RSFTQLAGATPPPPHSAASSSSRPTIIAAGGRQVPVGRATAQPRVNVANIYSPFASCS 1336


>Z70213-9|CAA94177.1| 1520|Caenorhabditis elegans Hypothetical
           protein K12D12.1 protein.
          Length = 1520

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 14/43 (32%), Positives = 25/43 (58%)
 Frame = +3

Query: 408 YKYFEVILIDPSHNAIPRDPKINWIVNAVHKHREMRGLTSAGK 536
           YK ++ IL++ + N   RDPK+N I   ++K +    + + GK
Sbjct: 117 YKIYDEILVNAADNK-QRDPKMNTIKITINKEKNEISVYNNGK 158


>Z49069-5|CAA88867.1| 1520|Caenorhabditis elegans Hypothetical
           protein K12D12.1 protein.
          Length = 1520

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 14/43 (32%), Positives = 25/43 (58%)
 Frame = +3

Query: 408 YKYFEVILIDPSHNAIPRDPKINWIVNAVHKHREMRGLTSAGK 536
           YK ++ IL++ + N   RDPK+N I   ++K +    + + GK
Sbjct: 117 YKIYDEILVNAADNK-QRDPKMNTIKITINKEKNEISVYNNGK 158


>Z30317-5|CAA82971.4| 1890|Caenorhabditis elegans Hypothetical
           protein T16G12.1 protein.
          Length = 1890

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = +2

Query: 290 WCQPTETHSQPAVYC*GACWSP 355
           WC P  T+ + A+YC  A ++P
Sbjct: 807 WCNPYSTNLRKAIYCGAAKYAP 828


>U80440-1|AAK21472.1| 4568|Caenorhabditis elegans Dynein heavy chain
           protein 1 protein.
          Length = 4568

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 14/39 (35%), Positives = 18/39 (46%)
 Frame = +3

Query: 399 DSSYKYFEVILIDPSHNAIPRDPKINWIVNAVHKHREMR 515
           D  Y  F  +L D +        K++W V AVHK  E R
Sbjct: 420 DDEYDKFIALLRDINKKKRDDPSKLSWKVTAVHKRLETR 458


>L33260-1|AAC37251.1| 4568|Caenorhabditis elegans dynein heavy chain
           protein.
          Length = 4568

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 14/39 (35%), Positives = 18/39 (46%)
 Frame = +3

Query: 399 DSSYKYFEVILIDPSHNAIPRDPKINWIVNAVHKHREMR 515
           D  Y  F  +L D +        K++W V AVHK  E R
Sbjct: 420 DDEYDKFIALLRDINKKKRDDPSKLSWKVTAVHKRLETR 458


>Z46828-1|CAA86856.1|  542|Caenorhabditis elegans Hypothetical
           protein R03D7.2 protein.
          Length = 542

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = +3

Query: 54  ELYRKKLSDVMRFLLRIRVWQYRQLTRMHRAPR 152
           EL R  + + +   ++ R W    LTR+HR P+
Sbjct: 264 ELKRAAIGEPLTLAVKGRRWPSMHLTRVHRCPK 296


>U55857-5|AAA98031.1|  602|Caenorhabditis elegans Hypothetical
           protein K08D10.5 protein.
          Length = 602

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = +3

Query: 54  ELYRKKLSDVMRFLLRIRVWQYRQLTRMHRAPR 152
           EL R  + + +   ++ R W    LTR+HR P+
Sbjct: 363 ELKRAAVGEPLTLAVKGRRWSSMHLTRVHRCPK 395


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,310,379
Number of Sequences: 27780
Number of extensions: 265266
Number of successful extensions: 751
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 717
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 751
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1184216096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)