Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0003_L22
         (475 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6F12.07 |tom20||mitochondrial TOM complex subunit Tom20|Schi...    29   0.36 
SPAC2G11.03c |vps45||vacuolar sorting protein Vps 45|Schizosacch...    29   0.36 
SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces pomb...    27   1.1  
SPCC4B3.04c |nte1||lysophospholipase|Schizosaccharomyces pombe|c...    25   5.9  
SPCC1906.03 |wtf19||wtf element Wtf19|Schizosaccharomyces pombe|...    25   7.8  
SPCC1620.02 |wtf23||wtf element Wtf23|Schizosaccharomyces pombe|...    25   7.8  

>SPAC6F12.07 |tom20||mitochondrial TOM complex subunit
           Tom20|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 152

 Score = 29.1 bits (62), Expect = 0.36
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = +1

Query: 127 IAGTLFLGYCVYFDQQRRKDP 189
           +  T  +GY +YFD +RR DP
Sbjct: 10  LLATAAVGYAIYFDYKRRNDP 30


>SPAC2G11.03c |vps45||vacuolar sorting protein Vps
           45|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 558

 Score = 29.1 bits (62), Expect = 0.36
 Identities = 15/46 (32%), Positives = 23/46 (50%)
 Frame = +1

Query: 31  QEIIVIIACLQSFESEIKMMEITRTTLGIAVGIAGTLFLGYCVYFD 168
           Q+IIV+I    ++E    + E   T  G+ + +AGT  L    Y D
Sbjct: 503 QDIIVVIVGGATYEEAHFVSEFNATQPGVRIILAGTTILNSTAYID 548


>SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1428

 Score = 27.5 bits (58), Expect = 1.1
 Identities = 11/28 (39%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
 Frame = +1

Query: 109 LGIAVGIAGTLFLGYCVYF-DQQRRKDP 189
           LG+ +G+  ++F GYC  F D++  K P
Sbjct: 319 LGLIMGVFNSVFAGYCTIFCDEEVLKTP 346


>SPCC4B3.04c |nte1||lysophospholipase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1316

 Score = 25.0 bits (52), Expect = 5.9
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = +3

Query: 225 LFWLFYLLICIMIFFKKYI*LPKYPK 302
           L +LF++ IC++I   +Y  L KY +
Sbjct: 67  LLFLFFVSICVVILVVRYRYLNKYAR 92


>SPCC1906.03 |wtf19||wtf element Wtf19|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 393

 Score = 24.6 bits (51), Expect = 7.8
 Identities = 8/21 (38%), Positives = 14/21 (66%)
 Frame = +3

Query: 204 VERA*EILFWLFYLLICIMIF 266
           + R   I+ WL +L+IC ++F
Sbjct: 230 IRREMMIIIWLLWLIICCILF 250


>SPCC1620.02 |wtf23||wtf element Wtf23|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 368

 Score = 24.6 bits (51), Expect = 7.8
 Identities = 8/21 (38%), Positives = 14/21 (66%)
 Frame = +3

Query: 204 VERA*EILFWLFYLLICIMIF 266
           + R   I+ WL +L+IC ++F
Sbjct: 197 IRREMMIIIWLLWLIICCILF 217


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,864,105
Number of Sequences: 5004
Number of extensions: 34505
Number of successful extensions: 71
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 70
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 71
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 182448900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)