Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0003_L22
         (475 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_01_0304 + 2280461-2281192                                           28   3.3  
12_01_0772 - 7016864-7017012,7017114-7017262,7017346-7017489,701...    27   7.7  

>11_01_0304 + 2280461-2281192
          Length = 243

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 12/23 (52%), Positives = 16/23 (69%)
 Frame = +3

Query: 87  DGDNTYYIRDCCWYRRYSVFRIL 155
           DG N++Y+RD   YRRY   R+L
Sbjct: 24  DGYNSHYVRDDDPYRRYRELRML 46


>12_01_0772 -
           7016864-7017012,7017114-7017262,7017346-7017489,
           7017549-7017719,7017907-7018020,7018115-7018215,
           7018296-7018416,7018601-7018830,7019203-7019265,
           7019528-7019570,7019860-7019953,7020428-7020501,
           7020616-7020744,7020940-7021017,7021353-7021639
          Length = 648

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 14/49 (28%), Positives = 24/49 (48%)
 Frame = +1

Query: 4   RGINGELS*QEIIVIIACLQSFESEIKMMEITRTTLGIAVGIAGTLFLG 150
           R  N +L+   +  ++ CL S    + ++ I    LG +V +A   FLG
Sbjct: 465 RAENCDLTNIGVTELLECLSSVSEPLNLLSIADNHLGSSVAVALAKFLG 513


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,387,591
Number of Sequences: 37544
Number of extensions: 169686
Number of successful extensions: 233
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 228
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 233
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 967140324
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)