Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0003_L22
         (475 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z74472-2|CAA98945.1|  188|Caenorhabditis elegans Hypothetical pr...    40   0.001
Z68297-5|CAC70081.1|  394|Caenorhabditis elegans Hypothetical pr...    27   5.2  

>Z74472-2|CAA98945.1|  188|Caenorhabditis elegans Hypothetical
           protein F23H12.2 protein.
          Length = 188

 Score = 39.9 bits (89), Expect = 0.001
 Identities = 15/35 (42%), Positives = 23/35 (65%)
 Frame = +1

Query: 85  MMEITRTTLGIAVGIAGTLFLGYCVYFDQQRRKDP 189
           ++   ++ + +A GIAG  FLGYC+YFD +R   P
Sbjct: 5   ILGFNKSNVVLAAGIAGAAFLGYCIYFDHKRINAP 39


>Z68297-5|CAC70081.1|  394|Caenorhabditis elegans Hypothetical
           protein F11A10.7 protein.
          Length = 394

 Score = 27.5 bits (58), Expect = 5.2
 Identities = 17/49 (34%), Positives = 23/49 (46%)
 Frame = -2

Query: 171 LVKVYTIS*KQSTGDTNSNP*CSTCYLHHFNFTFKRLQTRNNNDYLLLR 25
           L K+ T   + S G  N N    T  LH F F+ K+ +T   ND   L+
Sbjct: 328 LTKIQTAKKRTSHGKKNQNE--ITGKLHKFKFSTKKERTTEQNDRRALK 374


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,977,726
Number of Sequences: 27780
Number of extensions: 184993
Number of successful extensions: 364
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 359
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 364
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 860942358
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)