Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0003_L20
         (481 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase pr...    23   2.2  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       22   3.9  
U66709-1|AAB07515.1|  182|Apis mellifera ankyrin protein.              21   9.1  

>AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase
           protein.
          Length = 342

 Score = 22.6 bits (46), Expect = 2.2
 Identities = 12/44 (27%), Positives = 21/44 (47%)
 Frame = +3

Query: 39  SMESQVSQLLKYSLAANTHHTKDRGQLKHLLMQHSKQLKRKHMT 170
           S   ++++ L  S     +H K  G ++ L      +LK KH+T
Sbjct: 84  STTREIAEKLHVSHTCIENHLKQLGYVQKLDTWVPHELKEKHLT 127


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 21.8 bits (44), Expect = 3.9
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = +1

Query: 364 KSRCRRCDCASSHGLPLPSPGLSH 435
           K R +R  C+++ G+P  SP L+H
Sbjct: 582 KRRPQRA-CSTTGGVPSKSPTLTH 604


>U66709-1|AAB07515.1|  182|Apis mellifera ankyrin protein.
          Length = 182

 Score = 20.6 bits (41), Expect = 9.1
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = -1

Query: 328 VRFQVLAVTAPRRVEFHQP 272
           VR   +    PRR +FH+P
Sbjct: 33  VRVSPVITIEPRRRKFHKP 51


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 134,349
Number of Sequences: 438
Number of extensions: 2599
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 13051674
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)