Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0003_L16
         (541 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1620.08 |||succinate-CoA ligase |Schizosaccharomyces pombe|c...    25   7.2  
SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces...    25   9.5  
SPBC31F10.13c |hip1|hir1|hira protein Hip1|Schizosaccharomyces p...    25   9.5  
SPBC409.18 |||phosphatidic acid phosphatase |Schizosaccharomyces...    25   9.5  

>SPCC1620.08 |||succinate-CoA ligase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 433

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = +3

Query: 96  RFHESFLKKKKLFTHKYISH 155
           R    FL+K+ L  H+YISH
Sbjct: 12  RAFSPFLQKRNLALHEYISH 31


>SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1526

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 11/39 (28%), Positives = 19/39 (48%)
 Frame = -3

Query: 407 SYRYIYYNIKSYGYTIYNRTVQFILWRFNFTYNHKNISS 291
           S   +  +I++    IY R   +++ R N + NH N  S
Sbjct: 400 SQTQVISSIEALAKAIYERNFGWLVKRLNTSLNHSNAQS 438


>SPBC31F10.13c |hip1|hir1|hira protein Hip1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 932

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 9/36 (25%), Positives = 17/36 (47%)
 Frame = +3

Query: 222 LHLFIFYILCITYLAYIYIYSFITANVLMVVSKIKP 329
           LH    Y+LCI+    +Y ++ +    L   + + P
Sbjct: 680 LHCNNAYLLCISSSGMVYAWNVVNKTALFTANSLAP 715


>SPBC409.18 |||phosphatidic acid phosphatase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 279

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 12/34 (35%), Positives = 22/34 (64%)
 Frame = -1

Query: 520 VLSIT*AWFVY*VTVLFRSFRTRFSLTELHIKHP 419
           +++I+ ++FV+   VL   F  +FSL ++ I HP
Sbjct: 21  LIAISLSYFVF--DVLMLPFTRQFSLEDITISHP 52


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,892,401
Number of Sequences: 5004
Number of extensions: 33242
Number of successful extensions: 80
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 77
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 80
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 221892220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)