Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0003_L16
         (541 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1372 + 26104857-26104968,26105055-26105428,26105598-261056...    30   1.0  
08_01_0914 + 9010613-9013316,9013537-9013748                           28   4.1  

>07_03_1372 +
           26104857-26104968,26105055-26105428,26105598-26105696,
           26107160-26107222,26107546-26107815,26108158-26108278,
           26108386-26108522,26108614-26108727,26108799-26108998,
           26109094-26109285,26109378-26109543
          Length = 615

 Score = 30.3 bits (65), Expect = 1.0
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = -3

Query: 407 SYRYIYYNIKSYGYTIYNRTVQFILWRFNFTYN 309
           SY  I++   SY + +Y + + F+L  FNFT N
Sbjct: 578 SYNLIFHGKTSYYFNLYLQGLAFLLLGFNFTGN 610


>08_01_0914 + 9010613-9013316,9013537-9013748
          Length = 971

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 17/66 (25%), Positives = 31/66 (46%), Gaps = 2/66 (3%)
 Frame = +1

Query: 31  LSINSHLLFI*YFHISNKSNNHDFMKAF*KKKNFLHISI--SHISNRTSLSQYNIKTNRY 204
           LS   +L  + +F +   S   +  + F K    ++ S+  +H+     LS +NI + R+
Sbjct: 195 LSWMGNLTTLTHFVLEGNSFTGNIPETFGKMVKLIYFSVQDNHLEGHVPLSIFNISSIRF 254

Query: 205 FDNNIN 222
           FD   N
Sbjct: 255 FDLGFN 260


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,425,177
Number of Sequences: 37544
Number of extensions: 157980
Number of successful extensions: 204
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 203
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 204
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1198356516
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)