Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0003_L13
(396 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC31E1.06 |bms1|SPBC800.01|GTP binding protein Bms1|Schizosacc... 27 1.1
SPBC336.02 |||18S rRNA dimethylase|Schizosaccharomyces pombe|chr... 27 1.4
SPBC582.06c |mcp6|hrs1, mug3|meiosis specific coiled-coil protei... 26 2.4
SPBC16G5.12c |top3||DNA topoisomerase III|Schizosaccharomyces po... 25 3.2
SPAC16E8.06c |nop12||RNA-binding protein Nop12|Schizosaccharomyc... 25 4.3
SPAC27D7.13c |ssm4|SPAC637.01c|p150-Glued|Schizosaccharomyces po... 25 4.3
SPCC970.10c |brl2|rfp1|ubiquitin-protein ligase E3 Brl2|Schizosa... 25 5.6
SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1 |Schizo... 25 5.6
SPAC140.04 |||conserved fungal protein|Schizosaccharomyces pombe... 25 5.6
SPAC3G9.14 |sak1||transcriptional repressor Sak1|Schizosaccharom... 24 9.8
SPAC4G9.09c |arg11||N-acetyl-gamma-glutamyl-phosphate reductase/... 24 9.8
SPAC1F7.07c |fip1||iron permease Fip1|Schizosaccharomyces pombe|... 24 9.8
>SPBC31E1.06 |bms1|SPBC800.01|GTP binding protein
Bms1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1121
Score = 27.1 bits (57), Expect = 1.1
Identities = 11/25 (44%), Positives = 17/25 (68%)
Frame = +3
Query: 222 LAVQWKNPHLLSQLTTMVILSSTLE 296
L+ +W+NP LL+QL + I S L+
Sbjct: 578 LSKKWENPQLLAQLKSRFITGSLLD 602
>SPBC336.02 |||18S rRNA dimethylase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 307
Score = 26.6 bits (56), Expect = 1.4
Identities = 12/33 (36%), Positives = 20/33 (60%)
Frame = +2
Query: 281 ELDPRIQVELEKLNAATDEINKLELELDESMKT 379
E+DPR+ E+ K T + KL++ L + +KT
Sbjct: 79 EMDPRMAAEITKRVQGTPKEKKLQVVLGDVIKT 111
>SPBC582.06c |mcp6|hrs1, mug3|meiosis specific coiled-coil protein
Mcp6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 327
Score = 25.8 bits (54), Expect = 2.4
Identities = 14/55 (25%), Positives = 26/55 (47%)
Frame = +2
Query: 218 VLSSTMEESSFTIPADDNGDTELDPRIQVELEKLNAATDEINKLELELDESMKTF 382
V S EESS + + +T+L ++ ++ T E+NK++ + D F
Sbjct: 144 VYKSKFEESSLRCKSLYSSNTKLKDSMETMKRRMETETKEMNKIKPKNDSESDRF 198
>SPBC16G5.12c |top3||DNA topoisomerase III|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 622
Score = 25.4 bits (53), Expect = 3.2
Identities = 9/29 (31%), Positives = 18/29 (62%)
Frame = +3
Query: 219 SLAVQWKNPHLLSQLTTMVILSSTLEFRS 305
++ W+ + +LTTM+IL + LE ++
Sbjct: 248 TIQFNWERAKVFDRLTTMIILENCLECKT 276
>SPAC16E8.06c |nop12||RNA-binding protein Nop12|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 438
Score = 25.0 bits (52), Expect = 4.3
Identities = 11/36 (30%), Positives = 23/36 (63%)
Frame = +2
Query: 233 MEESSFTIPADDNGDTELDPRIQVELEKLNAATDEI 340
+EE++ TI +D + P+ + + +KLN ++D+I
Sbjct: 63 VEEAAETIESDTKEVQNIKPKSKKKKKKLNDSSDDI 98
>SPAC27D7.13c |ssm4|SPAC637.01c|p150-Glued|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 670
Score = 25.0 bits (52), Expect = 4.3
Identities = 9/28 (32%), Positives = 18/28 (64%)
Frame = +2
Query: 293 RIQVELEKLNAATDEINKLELELDESMK 376
++ +LEK N DE+N +L+L + ++
Sbjct: 489 QLNAKLEKANIVIDELNSAKLKLSKQVE 516
>SPCC970.10c |brl2|rfp1|ubiquitin-protein ligase E3
Brl2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 680
Score = 24.6 bits (51), Expect = 5.6
Identities = 16/58 (27%), Positives = 28/58 (48%)
Frame = +2
Query: 221 LSSTMEESSFTIPADDNGDTELDPRIQVELEKLNAATDEINKLELELDESMKTFHLLL 394
L ST++ S+ ++ D +D E KLN +I+K+ ELD + H ++
Sbjct: 131 LLSTVDSSTNSVSRDPFSVLSIDDSALTE--KLNTINLDIDKILDELDTTRSQLHSII 186
>SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1336
Score = 24.6 bits (51), Expect = 5.6
Identities = 14/32 (43%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Frame = -1
Query: 135 LLFKCITRL-FKYNDII*KTFDNSSCNVLIIT 43
+L +C + L K + ++ KT N SC VLIIT
Sbjct: 1258 ILDECTSALDSKSSLLLEKTIQNLSCTVLIIT 1289
>SPAC140.04 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 295
Score = 24.6 bits (51), Expect = 5.6
Identities = 14/45 (31%), Positives = 23/45 (51%)
Frame = +2
Query: 236 EESSFTIPADDNGDTELDPRIQVELEKLNAATDEINKLELELDES 370
EE T+ + + EL R ++ELE+ D+ ELE+ E+
Sbjct: 82 EERKGTLKTEQANEEELLQRSRLELERKAKKYDQYAAGELEIKET 126
>SPAC3G9.14 |sak1||transcriptional repressor
Sak1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 766
Score = 23.8 bits (49), Expect = 9.8
Identities = 13/51 (25%), Positives = 21/51 (41%)
Frame = +2
Query: 209 WLLVLSSTMEESSFTIPADDNGDTELDPRIQVELEKLNAATDEINKLELEL 361
W +LS+ S P D + +VEL +++ D + LEL
Sbjct: 570 WYSILSTCSNPSELLDPLKDKHEASDTSMNRVELRQIDGVLDRMADFFLEL 620
>SPAC4G9.09c |arg11||N-acetyl-gamma-glutamyl-phosphate
reductase/acetylglutamate kinase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 885
Score = 23.8 bits (49), Expect = 9.8
Identities = 10/27 (37%), Positives = 18/27 (66%)
Frame = +2
Query: 278 TELDPRIQVELEKLNAATDEINKLELE 358
T+L + E++ +N +TD++ KLE E
Sbjct: 609 TKLPGYTKKEIQYVNLSTDDVKKLEEE 635
>SPAC1F7.07c |fip1||iron permease Fip1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 397
Score = 23.8 bits (49), Expect = 9.8
Identities = 12/38 (31%), Positives = 20/38 (52%)
Frame = +2
Query: 224 SSTMEESSFTIPADDNGDTELDPRIQVELEKLNAATDE 337
SS+ +E P DD GD +D I E+ + ++ +E
Sbjct: 345 SSSEDEFKINSPTDDKGDKAID--IVTEVRESSSPVEE 380
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,559,595
Number of Sequences: 5004
Number of extensions: 28192
Number of successful extensions: 91
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 90
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 91
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 132093910
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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