Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0003_L13
(396 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_01_0087 + 630355-630403,630502-630699,631858-631943,632238-63... 28 2.4
05_04_0309 - 20100231-20100307,20100362-20100503,20100588-201009... 28 3.1
07_01_0641 - 4790704-4790720,4790824-4791296,4791707-4792023,479... 27 4.1
05_03_0555 + 15425486-15426856 27 4.1
01_07_0105 - 41104655-41104851,41105818-41107150 27 5.5
05_06_0275 - 26869155-26870480 27 7.2
03_05_0776 + 27625122-27625415,27627226-27627273,27627455-276275... 27 7.2
03_01_0081 + 645214-645228,645791-645856,645973-646142,646265-64... 27 7.2
04_04_0970 - 29796739-29796954 26 9.6
03_02_0726 + 10722759-10722857,10722969-10723058,10723141-107232... 26 9.6
>08_01_0087 + 630355-630403,630502-630699,631858-631943,632238-632946,
633029-633194,633459-633934,634023-634873,635078-635987,
636597-636784
Length = 1210
Score = 28.3 bits (60), Expect = 2.4
Identities = 18/62 (29%), Positives = 32/62 (51%), Gaps = 2/62 (3%)
Frame = +2
Query: 215 LVLSSTMEESSFTIPA-DDNGD-TELDPRIQVELEKLNAATDEINKLELELDESMKTFHL 388
++ S E +SF +P D++ D T DPR +E + TD++N + DE F+
Sbjct: 1079 MLQSMGKEITSFPLPEIDESHDSTRGDPREIIEESSIGVETDDMNLSDQLNDEQRSAFNK 1138
Query: 389 LL 394
++
Sbjct: 1139 IM 1140
>05_04_0309 -
20100231-20100307,20100362-20100503,20100588-20100967,
20101049-20101076,20101182-20101306,20101402-20101457,
20101709-20101791,20101881-20101949,20102050-20102640
Length = 516
Score = 27.9 bits (59), Expect = 3.1
Identities = 15/34 (44%), Positives = 19/34 (55%)
Frame = +2
Query: 236 EESSFTIPADDNGDTELDPRIQVELEKLNAATDE 337
EE PA+++ + ELDP VELE L DE
Sbjct: 144 EEEQEAAPAEEDEEQELDPE-AVELEALTNEIDE 176
>07_01_0641 -
4790704-4790720,4790824-4791296,4791707-4792023,
4792094-4792423
Length = 378
Score = 27.5 bits (58), Expect = 4.1
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = +2
Query: 263 DDNGDTELDPRIQVELEKLNAATDEINKLE 352
DD D EL+P ++ + EK +D N LE
Sbjct: 320 DDEDDVELEPIVEEKFEKFEWDSDNDNVLE 349
>05_03_0555 + 15425486-15426856
Length = 456
Score = 27.5 bits (58), Expect = 4.1
Identities = 9/23 (39%), Positives = 14/23 (60%)
Frame = +3
Query: 288 TLEFRSNWRN*TLPLMKSISWSW 356
TLE++ W+ P +K I W+W
Sbjct: 419 TLEYQHLWKEDMKPALKDIVWAW 441
>01_07_0105 - 41104655-41104851,41105818-41107150
Length = 509
Score = 27.1 bits (57), Expect = 5.5
Identities = 16/55 (29%), Positives = 28/55 (50%)
Frame = +2
Query: 212 LLVLSSTMEESSFTIPADDNGDTELDPRIQVELEKLNAATDEINKLELELDESMK 376
++V T EE S + DD+G + D + +EL++ AT K E ++ + K
Sbjct: 425 IIVSQETEEEKSIAVSKDDDGQS--DGKQTIELKEAMTATKTDEKGEEQVAKDKK 477
>05_06_0275 - 26869155-26870480
Length = 441
Score = 26.6 bits (56), Expect = 7.2
Identities = 14/34 (41%), Positives = 22/34 (64%), Gaps = 2/34 (5%)
Frame = +2
Query: 206 GWLLVLSSTMEES--SFTIPADDNGDTELDPRIQ 301
GW+ V+S+ EES + T PAD+ T+L+ I+
Sbjct: 329 GWIDVISTPTEESCETTTSPADEETTTDLNGDIR 362
>03_05_0776 + 27625122-27625415,27627226-27627273,27627455-27627514,
27627633-27627802,27627901-27627973,27628096-27628161,
27628262-27628345,27628681-27628758,27629009-27629092,
27629835-27630137,27630227-27630397,27630971-27631161,
27631284-27631686,27632246-27632497,27632577-27633077,
27633181-27633278,27633400-27633499,27633722-27633867,
27633973-27634138
Length = 1095
Score = 26.6 bits (56), Expect = 7.2
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = +2
Query: 299 QVELEKLNAATDEINKLELELDESMK 376
+VELEKL +EI KL+ L + M+
Sbjct: 1026 EVELEKLRKKREEIQKLQHALSQKME 1051
>03_01_0081 +
645214-645228,645791-645856,645973-646142,646265-646319,
646434-646499,646604-646687,647091-647168,647425-647508,
648000-648302,648402-648572,649098-649288,649406-649808,
650368-650619,650696-651196,651306-651403,651810-651911,
652016-652178
Length = 933
Score = 26.6 bits (56), Expect = 7.2
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = +2
Query: 299 QVELEKLNAATDEINKLELELDESMK 376
+VELEKL +EI KL+ L + M+
Sbjct: 865 EVELEKLRKKREEIQKLQHALSQKME 890
>04_04_0970 - 29796739-29796954
Length = 71
Score = 26.2 bits (55), Expect = 9.6
Identities = 19/49 (38%), Positives = 26/49 (53%), Gaps = 3/49 (6%)
Frame = +2
Query: 227 STMEESSFT---IPADDNGDTELDPRIQVELEKLNAATDEINKLELELD 364
ST E+ + T +PA D G + I+V LE L+ DE +ELE D
Sbjct: 6 STSEKQAATGSKVPAADRGKEK--EEIEVMLEGLDLRADEEEDVELEED 52
>03_02_0726 +
10722759-10722857,10722969-10723058,10723141-10723245,
10723597-10723698,10724721-10724805,10725281-10725365,
10725473-10725517,10725685-10728672,10728839-10729055,
10729193-10729765
Length = 1462
Score = 26.2 bits (55), Expect = 9.6
Identities = 11/38 (28%), Positives = 19/38 (50%)
Frame = +2
Query: 221 LSSTMEESSFTIPADDNGDTELDPRIQVELEKLNAATD 334
+S S +P+ NGDTE+ + +E K A++
Sbjct: 698 ISLHSSRKSKLVPSSGNGDTEMSDALDIEKNKAAVASN 735
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,289,023
Number of Sequences: 37544
Number of extensions: 160151
Number of successful extensions: 336
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 330
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 336
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 684860244
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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