Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0003_L13
(396 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U55375-6|AAC69046.2| 431|Caenorhabditis elegans Hypothetical pr... 36 0.014
Z35637-3|CAA84689.1| 244|Caenorhabditis elegans Hypothetical pr... 32 0.13
Z81522-9|CAB61005.2| 3674|Caenorhabditis elegans Hypothetical pr... 31 0.23
Z81063-9|CAB61012.2| 3674|Caenorhabditis elegans Hypothetical pr... 31 0.23
AJ012469-1|CAA10033.1| 3674|Caenorhabditis elegans DYS-1 protein... 31 0.23
Z68298-10|CAA92607.1| 1034|Caenorhabditis elegans Hypothetical p... 29 0.91
AF038618-1|AAB92068.2| 386|Caenorhabditis elegans Hypothetical ... 29 0.91
Z81109-9|CAB54295.1| 226|Caenorhabditis elegans Hypothetical pr... 28 2.1
Z81109-8|CAB54296.1| 270|Caenorhabditis elegans Hypothetical pr... 28 2.1
Z81109-7|CAB03248.1| 268|Caenorhabditis elegans Hypothetical pr... 28 2.1
U50069-1|AAB37559.2| 884|Caenorhabditis elegans Hypothetical pr... 28 2.1
AC006627-5|AAO38662.1| 529|Caenorhabditis elegans Hypothetical ... 28 2.1
AC006627-4|AAK85459.1| 712|Caenorhabditis elegans Hypothetical ... 28 2.1
U80454-3|AAB37874.1| 216|Caenorhabditis elegans Hypothetical pr... 28 2.8
AC006834-1|AAF40010.3| 8545|Caenorhabditis elegans Abnormal nucl... 28 2.8
U50309-7|AAG24132.1| 1974|Caenorhabditis elegans Hypothetical pr... 27 3.7
AY130758-3|AAN61519.1| 10578|Caenorhabditis elegans 1MDa_1 prote... 27 3.7
AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 prote... 27 3.7
AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 prote... 27 3.7
Z75534-1|CAH04713.2| 326|Caenorhabditis elegans Hypothetical pr... 27 4.9
>U55375-6|AAC69046.2| 431|Caenorhabditis elegans Hypothetical
protein K03E6.7 protein.
Length = 431
Score = 35.5 bits (78), Expect = 0.014
Identities = 21/58 (36%), Positives = 32/58 (55%), Gaps = 4/58 (6%)
Frame = +2
Query: 221 LSSTMEESSFTIPADDNGDTELDPR----IQVELEKLNAATDEINKLELELDESMKTF 382
++ T T +++G L+ R I ELEKLN +TD INK+E++LD + F
Sbjct: 10 VTETFVSDPTTRQFEEDGHPPLETRHLNMIHEELEKLNISTDVINKMEVQLDLARADF 67
>Z35637-3|CAA84689.1| 244|Caenorhabditis elegans Hypothetical
protein C03C10.4 protein.
Length = 244
Score = 32.3 bits (70), Expect = 0.13
Identities = 17/37 (45%), Positives = 24/37 (64%)
Frame = +2
Query: 272 GDTELDPRIQVELEKLNAATDEINKLELELDESMKTF 382
GD +L I+ +LE LN ATD+IN E++L+ K F
Sbjct: 4 GDDQLIS-IRKQLENLNNATDDINSYEMKLETVKKQF 39
>Z81522-9|CAB61005.2| 3674|Caenorhabditis elegans Hypothetical protein
F15D3.1a protein.
Length = 3674
Score = 31.5 bits (68), Expect = 0.23
Identities = 19/62 (30%), Positives = 31/62 (50%), Gaps = 4/62 (6%)
Frame = +2
Query: 203 IGWLLVLSSTMEESSFTIP----ADDNGDTELDPRIQVELEKLNAATDEINKLELELDES 370
IG+LL + + S+F IP D + EL P++ E E+ +E+N E D+S
Sbjct: 1213 IGFLLQARKSADISAFDIPHEYHEDLGNEAELIPKLSREFEEWTVKLNEMNSTATEKDDS 1272
Query: 371 MK 376
+
Sbjct: 1273 AR 1274
>Z81063-9|CAB61012.2| 3674|Caenorhabditis elegans Hypothetical protein
F15D3.1a protein.
Length = 3674
Score = 31.5 bits (68), Expect = 0.23
Identities = 19/62 (30%), Positives = 31/62 (50%), Gaps = 4/62 (6%)
Frame = +2
Query: 203 IGWLLVLSSTMEESSFTIP----ADDNGDTELDPRIQVELEKLNAATDEINKLELELDES 370
IG+LL + + S+F IP D + EL P++ E E+ +E+N E D+S
Sbjct: 1213 IGFLLQARKSADISAFDIPHEYHEDLGNEAELIPKLSREFEEWTVKLNEMNSTATEKDDS 1272
Query: 371 MK 376
+
Sbjct: 1273 AR 1274
>AJ012469-1|CAA10033.1| 3674|Caenorhabditis elegans DYS-1 protein
protein.
Length = 3674
Score = 31.5 bits (68), Expect = 0.23
Identities = 19/62 (30%), Positives = 31/62 (50%), Gaps = 4/62 (6%)
Frame = +2
Query: 203 IGWLLVLSSTMEESSFTIP----ADDNGDTELDPRIQVELEKLNAATDEINKLELELDES 370
IG+LL + + S+F IP D + EL P++ E E+ +E+N E D+S
Sbjct: 1213 IGFLLQARKSADISAFDIPHEYHEDLGNEAELIPKLSREFEEWTVKLNEMNSTATEKDDS 1272
Query: 371 MK 376
+
Sbjct: 1273 AR 1274
>Z68298-10|CAA92607.1| 1034|Caenorhabditis elegans Hypothetical
protein F44D12.1 protein.
Length = 1034
Score = 29.5 bits (63), Expect = 0.91
Identities = 14/49 (28%), Positives = 29/49 (59%)
Frame = +2
Query: 230 TMEESSFTIPADDNGDTELDPRIQVELEKLNAATDEINKLELELDESMK 376
TM+E S + + + E D R+Q E+EK+ ++E+ L+ +L+ + +
Sbjct: 75 TMQERSIVLEENSRQNEERD-RLQKEIEKMKEDSEEVAALKQKLENTRR 122
>AF038618-1|AAB92068.2| 386|Caenorhabditis elegans Hypothetical
protein F42G8.9 protein.
Length = 386
Score = 29.5 bits (63), Expect = 0.91
Identities = 20/58 (34%), Positives = 30/58 (51%), Gaps = 4/58 (6%)
Frame = +2
Query: 224 SSTMEESSFTIPADD----NGDTELDPRIQVELEKLNAATDEINKLELELDESMKTFH 385
S+ E + TI +D N +++PR+ V L+KLN E K+E E D K F+
Sbjct: 257 SNNSEHLNVTINSDSVGTFNSMEKIEPRVSVSLDKLN----ENGKVETEKDLKKKNFN 310
>Z81109-9|CAB54295.1| 226|Caenorhabditis elegans Hypothetical
protein R10D12.13c protein.
Length = 226
Score = 28.3 bits (60), Expect = 2.1
Identities = 9/35 (25%), Positives = 21/35 (60%)
Frame = +2
Query: 254 IPADDNGDTELDPRIQVELEKLNAATDEINKLELE 358
+P ++ GD E +++ E+E + + ++K+E E
Sbjct: 129 VPEEEEGDEESTEKVEDEIETMRKEMERLSKIEAE 163
>Z81109-8|CAB54296.1| 270|Caenorhabditis elegans Hypothetical
protein R10D12.13b protein.
Length = 270
Score = 28.3 bits (60), Expect = 2.1
Identities = 9/35 (25%), Positives = 21/35 (60%)
Frame = +2
Query: 254 IPADDNGDTELDPRIQVELEKLNAATDEINKLELE 358
+P ++ GD E +++ E+E + + ++K+E E
Sbjct: 173 VPEEEEGDEESTEKVEDEIETMRKEMERLSKIEAE 207
>Z81109-7|CAB03248.1| 268|Caenorhabditis elegans Hypothetical
protein R10D12.13a protein.
Length = 268
Score = 28.3 bits (60), Expect = 2.1
Identities = 9/35 (25%), Positives = 21/35 (60%)
Frame = +2
Query: 254 IPADDNGDTELDPRIQVELEKLNAATDEINKLELE 358
+P ++ GD E +++ E+E + + ++K+E E
Sbjct: 171 VPEEEEGDEESTEKVEDEIETMRKEMERLSKIEAE 205
>U50069-1|AAB37559.2| 884|Caenorhabditis elegans Hypothetical
protein C09B9.3 protein.
Length = 884
Score = 28.3 bits (60), Expect = 2.1
Identities = 16/27 (59%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
Frame = +2
Query: 299 QVELEKLNAATDEINKLELE-LDESMK 376
Q ELEKLNAA E ++ELE LD K
Sbjct: 513 QKELEKLNAAKKEEERMELEKLDAERK 539
>AC006627-5|AAO38662.1| 529|Caenorhabditis elegans Hypothetical
protein E01A2.2b protein.
Length = 529
Score = 28.3 bits (60), Expect = 2.1
Identities = 14/48 (29%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
Frame = +2
Query: 218 VLSSTMEESSFT-IPADDNGDTELDPRIQVELEKLNAATDEINKLELE 358
VL+ +E+ S I D+NG+ P+ + E+++ + AT+E+ + +E
Sbjct: 20 VLAQKLEDESLADIKKDENGNGTEQPKEEPEVKQESGATEELEEGAIE 67
>AC006627-4|AAK85459.1| 712|Caenorhabditis elegans Hypothetical
protein E01A2.2a protein.
Length = 712
Score = 28.3 bits (60), Expect = 2.1
Identities = 14/48 (29%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
Frame = +2
Query: 218 VLSSTMEESSFT-IPADDNGDTELDPRIQVELEKLNAATDEINKLELE 358
VL+ +E+ S I D+NG+ P+ + E+++ + AT+E+ + +E
Sbjct: 203 VLAQKLEDESLADIKKDENGNGTEQPKEEPEVKQESGATEELEEGAIE 250
>U80454-3|AAB37874.1| 216|Caenorhabditis elegans Hypothetical
protein T16A1.3 protein.
Length = 216
Score = 27.9 bits (59), Expect = 2.8
Identities = 18/60 (30%), Positives = 29/60 (48%)
Frame = +2
Query: 167 RFILISCDVI*VIGWLLVLSSTMEESSFTIPADDNGDTELDPRIQVELEKLNAATDEINK 346
+FI + VI +L + +STM T PA + LDP I+ +L N + + + K
Sbjct: 33 KFIPTFAVTLKVIFFLTLANSTMASRPLTYPALVSTIKYLDPNIRFQLVARNPSLENLGK 92
>AC006834-1|AAF40010.3| 8545|Caenorhabditis elegans Abnormal nuclear
anchorage protein1 protein.
Length = 8545
Score = 27.9 bits (59), Expect = 2.8
Identities = 14/27 (51%), Positives = 18/27 (66%)
Frame = +2
Query: 299 QVELEKLNAATDEINKLELELDESMKT 379
Q EL+KLN A D I +L LD++ KT
Sbjct: 3091 QDELDKLNNANDAIKRLGDALDDAEKT 3117
Score = 27.9 bits (59), Expect = 2.8
Identities = 14/27 (51%), Positives = 18/27 (66%)
Frame = +2
Query: 299 QVELEKLNAATDEINKLELELDESMKT 379
Q EL+KLN A D I +L LD++ KT
Sbjct: 3994 QDELDKLNNANDAIKRLGDALDDAEKT 4020
Score = 27.9 bits (59), Expect = 2.8
Identities = 14/27 (51%), Positives = 18/27 (66%)
Frame = +2
Query: 299 QVELEKLNAATDEINKLELELDESMKT 379
Q EL+KLN A D I +L LD++ KT
Sbjct: 4948 QDELDKLNNANDAIKRLGDALDDAEKT 4974
Score = 27.9 bits (59), Expect = 2.8
Identities = 14/27 (51%), Positives = 18/27 (66%)
Frame = +2
Query: 299 QVELEKLNAATDEINKLELELDESMKT 379
Q EL+KLN A D I +L LD++ KT
Sbjct: 5851 QDELDKLNNANDAIKRLGDALDDAEKT 5877
Score = 27.9 bits (59), Expect = 2.8
Identities = 14/27 (51%), Positives = 18/27 (66%)
Frame = +2
Query: 299 QVELEKLNAATDEINKLELELDESMKT 379
Q EL+KLN A D I +L LD++ KT
Sbjct: 6754 QDELDKLNNANDAIKRLGDALDDAEKT 6780
Score = 27.9 bits (59), Expect = 2.8
Identities = 14/27 (51%), Positives = 18/27 (66%)
Frame = +2
Query: 299 QVELEKLNAATDEINKLELELDESMKT 379
Q EL+KLN A D I +L LD++ KT
Sbjct: 7657 QDELDKLNNANDAIKRLGDALDDAEKT 7683
>U50309-7|AAG24132.1| 1974|Caenorhabditis elegans Hypothetical protein
F58G4.1 protein.
Length = 1974
Score = 27.5 bits (58), Expect = 3.7
Identities = 15/54 (27%), Positives = 28/54 (51%), Gaps = 3/54 (5%)
Frame = +2
Query: 224 SSTMEESSFTIPADDNGDTEL---DPRIQVELEKLNAATDEINKLELELDESMK 376
S T+E ++ + G EL +++ ++ +L A D NKL ++ +SMK
Sbjct: 1601 SRTIESMQVSLETESRGRAELLKTKKKLEGDVNELEIALDHSNKLNVDGQKSMK 1654
>AY130758-3|AAN61519.1| 10578|Caenorhabditis elegans 1MDa_1 protein
protein.
Length = 10578
Score = 27.5 bits (58), Expect = 3.7
Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
Frame = +2
Query: 227 STMEESSFTIPADDNGDTELDPR--IQVELEKLNAATDEINKLELEL 361
ST+ E+S T + G +E + + V+ EK TDE KLE E+
Sbjct: 9326 STISETSETSAVESAGPSESETQNVAAVDKEKKQKETDEKQKLEAEI 9372
>AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 protein
protein.
Length = 18519
Score = 27.5 bits (58), Expect = 3.7
Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
Frame = +2
Query: 227 STMEESSFTIPADDNGDTELDPR--IQVELEKLNAATDEINKLELEL 361
ST+ E+S T + G +E + + V+ EK TDE KLE E+
Sbjct: 9346 STISETSETSAVESAGPSESETQNVAAVDKEKKQKETDEKQKLEAEI 9392
>AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 protein
protein.
Length = 18534
Score = 27.5 bits (58), Expect = 3.7
Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
Frame = +2
Query: 227 STMEESSFTIPADDNGDTELDPR--IQVELEKLNAATDEINKLELEL 361
ST+ E+S T + G +E + + V+ EK TDE KLE E+
Sbjct: 9346 STISETSETSAVESAGPSESETQNVAAVDKEKKQKETDEKQKLEAEI 9392
>Z75534-1|CAH04713.2| 326|Caenorhabditis elegans Hypothetical
protein F08A10.2 protein.
Length = 326
Score = 27.1 bits (57), Expect = 4.9
Identities = 9/29 (31%), Positives = 21/29 (72%)
Frame = +2
Query: 35 IYFVIIRTLHELLSNVF*IISLYLNNLVM 121
I+F++++ +H+LL N+ I S+ N+++
Sbjct: 149 IFFILVQIIHKLLQNICIISSMIDENILL 177
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,392,366
Number of Sequences: 27780
Number of extensions: 152210
Number of successful extensions: 435
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 407
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 435
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 609015246
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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