Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0003_L13
         (396 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    24   0.73 
AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier...    24   0.73 
DQ435332-1|ABD92647.1|  135|Apis mellifera OBP15 protein.              23   1.3  
AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    21   5.1  
DQ325121-1|ABD14135.1|  181|Apis mellifera complementary sex det...    21   6.8  
DQ325120-1|ABD14134.1|  181|Apis mellifera complementary sex det...    21   6.8  
DQ325119-1|ABD14133.1|  181|Apis mellifera complementary sex det...    21   6.8  
DQ325118-1|ABD14132.1|  181|Apis mellifera complementary sex det...    21   6.8  
DQ325117-1|ABD14131.1|  181|Apis mellifera complementary sex det...    21   6.8  
DQ325116-1|ABD14130.1|  181|Apis mellifera complementary sex det...    21   6.8  
DQ325115-1|ABD14129.1|  185|Apis mellifera complementary sex det...    21   6.8  
DQ325114-1|ABD14128.1|  181|Apis mellifera complementary sex det...    21   6.8  
DQ069332-1|AAZ32217.1|  296|Apis mellifera RNA polymerase II lar...    20   9.0  
AY569698-1|AAS86651.1|  407|Apis mellifera complementary sex det...    20   9.0  

>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 23.8 bits (49), Expect = 0.73
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = -3

Query: 343 IDFISGSVQFLQFDLNSRVELSITIVVS 260
           I F+S  V +L  D   +V LSI+I++S
Sbjct: 250 ISFLSVLVFYLPSDSGEKVSLSISILLS 277


>AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier
           protein JHBP-1 protein.
          Length = 253

 Score = 23.8 bits (49), Expect = 0.73
 Identities = 8/18 (44%), Positives = 14/18 (77%)
 Frame = +3

Query: 261 LTTMVILSSTLEFRSNWR 314
           LTTM++++  +E  +NWR
Sbjct: 12  LTTMLMMAIAVELPNNWR 29


>DQ435332-1|ABD92647.1|  135|Apis mellifera OBP15 protein.
          Length = 135

 Score = 23.0 bits (47), Expect = 1.3
 Identities = 17/59 (28%), Positives = 28/59 (47%), Gaps = 2/59 (3%)
 Frame = -1

Query: 258 GIVNEDSS--IVLLRTRSHPIT*ITSQLISIKRPIIHYKHNKQLLFKCITRLFKYNDII 88
           G  NE  S  I  +    + I  + ++  +I    +H K  K  +F+CIT+    NDI+
Sbjct: 77  GNFNEHVSREIAKIFLNENEINQLITECSAISDTNVHLKITK--IFQCITKFKTINDIL 133


>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 21.0 bits (42), Expect = 5.1
 Identities = 8/20 (40%), Positives = 11/20 (55%)
 Frame = +2

Query: 236 EESSFTIPADDNGDTELDPR 295
           E  S   P   +GDTE+ P+
Sbjct: 328 ENKSKGTPGSGDGDTEISPQ 347


>DQ325121-1|ABD14135.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 20.6 bits (41), Expect = 6.8
 Identities = 7/16 (43%), Positives = 9/16 (56%)
 Frame = -3

Query: 52  NYNKINNTIRTSHSSL 5
           NYN  NN   T++  L
Sbjct: 93  NYNNYNNNYNTNYKKL 108


>DQ325120-1|ABD14134.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 20.6 bits (41), Expect = 6.8
 Identities = 7/16 (43%), Positives = 9/16 (56%)
 Frame = -3

Query: 52  NYNKINNTIRTSHSSL 5
           NYN  NN   T++  L
Sbjct: 93  NYNNYNNNYNTNYKKL 108


>DQ325119-1|ABD14133.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 20.6 bits (41), Expect = 6.8
 Identities = 7/16 (43%), Positives = 9/16 (56%)
 Frame = -3

Query: 52  NYNKINNTIRTSHSSL 5
           NYN  NN   T++  L
Sbjct: 93  NYNNYNNNYNTNYKKL 108


>DQ325118-1|ABD14132.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 20.6 bits (41), Expect = 6.8
 Identities = 7/16 (43%), Positives = 9/16 (56%)
 Frame = -3

Query: 52  NYNKINNTIRTSHSSL 5
           NYN  NN   T++  L
Sbjct: 93  NYNNYNNNYNTNYKKL 108


>DQ325117-1|ABD14131.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 20.6 bits (41), Expect = 6.8
 Identities = 7/16 (43%), Positives = 9/16 (56%)
 Frame = -3

Query: 52  NYNKINNTIRTSHSSL 5
           NYN  NN   T++  L
Sbjct: 93  NYNNYNNNYNTNYKKL 108


>DQ325116-1|ABD14130.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 20.6 bits (41), Expect = 6.8
 Identities = 7/16 (43%), Positives = 9/16 (56%)
 Frame = -3

Query: 52  NYNKINNTIRTSHSSL 5
           NYN  NN   T++  L
Sbjct: 93  NYNNYNNNYNTNYKKL 108


>DQ325115-1|ABD14129.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 20.6 bits (41), Expect = 6.8
 Identities = 7/16 (43%), Positives = 9/16 (56%)
 Frame = -3

Query: 52  NYNKINNTIRTSHSSL 5
           NYN  NN   T++  L
Sbjct: 97  NYNNYNNNYNTNYKKL 112


>DQ325114-1|ABD14128.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 20.6 bits (41), Expect = 6.8
 Identities = 7/16 (43%), Positives = 9/16 (56%)
 Frame = -3

Query: 52  NYNKINNTIRTSHSSL 5
           NYN  NN   T++  L
Sbjct: 93  NYNNYNNNYNTNYKKL 108


>DQ069332-1|AAZ32217.1|  296|Apis mellifera RNA polymerase II large
           subunit protein.
          Length = 296

 Score = 20.2 bits (40), Expect = 9.0
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = +2

Query: 272 GDTELDPRIQVELEK 316
           GDT  DP+  +E++K
Sbjct: 151 GDTIADPQTYLEIQK 165


>AY569698-1|AAS86651.1|  407|Apis mellifera complementary sex
           determiner protein.
          Length = 407

 Score = 20.2 bits (40), Expect = 9.0
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = -2

Query: 185 SLLV*SVPSYTISTTNNYCSNASQGYLNI 99
           S ++ S+ + TI   NNY +   + Y NI
Sbjct: 312 SKIISSLSNKTIHNNNNYKNYNKKLYYNI 340


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 106,601
Number of Sequences: 438
Number of extensions: 2087
Number of successful extensions: 14
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used:  9761793
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)