Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0003_L09
(157 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase Su... 37 4e-04
SPCC63.11 |prp28||U5 snRNP-associated protein Prp28 |Schizosacch... 32 0.012
SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3 |Schizosaccha... 31 0.016
SPBP8B7.16c |dbp2||ATP-dependent RNA helicase Dbp2|Schizosacchar... 31 0.027
SPCC10H11.01 |prp11||ATP-dependent RNA helicase Prp11|Schizosacc... 26 0.58
SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces p... 26 0.58
SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10 |Schizosac... 25 1.3
SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomy... 25 1.8
SPAP8A3.10 |||mitochondrial intermembrane space protein sorting ... 24 3.1
SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomy... 23 5.4
SPAP27G11.15 |slx1||structure-specific endonuclease catalytic su... 23 5.4
SPBC354.02c |sec61||translocon alpha subunit Sec61|Schizosacchar... 23 5.4
SPBC17F3.01c |rga5|SPBC557.01|GTPase activating protein Rga5|Sch... 22 9.5
SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomy... 22 9.5
SPCC24B10.02c |||NAD/NADH kinase|Schizosaccharomyces pombe|chr 3... 22 9.5
SPAC29E6.01 |pof11|SPAC30.05, mug156|F-box protein Pof11|Schizos... 22 9.5
>SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase
Sum3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 636
Score = 36.7 bits (81), Expect = 4e-04
Identities = 16/32 (50%), Positives = 23/32 (71%)
Frame = +3
Query: 30 IDKRQTLMFSATFPEDIATLSGTYLEQLLVRS 125
+++RQTLMFSATFP DI L+ +L+ + S
Sbjct: 362 VEERQTLMFSATFPRDIQLLARDFLKDYVFLS 393
>SPCC63.11 |prp28||U5 snRNP-associated protein Prp28
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 31.9 bits (69), Expect = 0.012
Identities = 13/23 (56%), Positives = 18/23 (78%)
Frame = +3
Query: 36 KRQTLMFSATFPEDIATLSGTYL 104
+RQT+MFSAT P +A L+ +YL
Sbjct: 449 RRQTIMFSATLPPRVANLAKSYL 471
>SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 578
Score = 31.5 bits (68), Expect = 0.016
Identities = 12/23 (52%), Positives = 18/23 (78%)
Frame = +3
Query: 39 RQTLMFSATFPEDIATLSGTYLE 107
RQT+ FSAT+PE + L+ T+L+
Sbjct: 346 RQTVFFSATWPESVRALAATFLK 368
>SPBP8B7.16c |dbp2||ATP-dependent RNA helicase
Dbp2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 550
Score = 30.7 bits (66), Expect = 0.027
Identities = 12/26 (46%), Positives = 19/26 (73%)
Frame = +3
Query: 39 RQTLMFSATFPEDIATLSGTYLEQLL 116
RQT+MFSAT+P+++ L+ YL +
Sbjct: 301 RQTVMFSATWPKEVQRLARDYLNDYI 326
>SPCC10H11.01 |prp11||ATP-dependent RNA helicase
Prp11|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1014
Score = 26.2 bits (55), Expect = 0.58
Identities = 11/24 (45%), Positives = 17/24 (70%)
Frame = +3
Query: 39 RQTLMFSATFPEDIATLSGTYLEQ 110
RQT++FSATFP + L+ L++
Sbjct: 600 RQTVLFSATFPRAMEALARKVLKK 623
>SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2280
Score = 26.2 bits (55), Expect = 0.58
Identities = 13/40 (32%), Positives = 19/40 (47%)
Frame = +3
Query: 15 GTRVPIDKRQTLMFSATFPEDIATLSGTYLEQLLVRSGRH 134
GTR+ ID ++ P + T S L + LV +G H
Sbjct: 692 GTRISIDNLSCMLEQENDPTQLRTPSPGKLVRFLVETGEH 731
>SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 848
Score = 25.0 bits (52), Expect = 1.3
Identities = 13/29 (44%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
Frame = +3
Query: 39 RQTLMFSATFPEDIATLSGTYLEQ-LLVR 122
RQTL+FSAT P + + L+ +LVR
Sbjct: 245 RQTLLFSATLPRTLVDFAKAGLQDPVLVR 273
>SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 578
Score = 24.6 bits (51), Expect = 1.8
Identities = 13/26 (50%), Positives = 18/26 (69%), Gaps = 3/26 (11%)
Frame = +3
Query: 24 VPIDKRQTLMFSATFP---EDIATLS 92
+P + RQTL+FSAT ED+A +S
Sbjct: 264 LPSENRQTLLFSATQTTKVEDLARIS 289
>SPAP8A3.10 |||mitochondrial intermembrane space protein sorting
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 171
Score = 23.8 bits (49), Expect = 3.1
Identities = 9/16 (56%), Positives = 12/16 (75%)
Frame = +3
Query: 99 YLEQLLVRSGRHRRWS 146
Y E+LLV+ GR RW+
Sbjct: 51 YTERLLVKQGRLPRWA 66
>SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 648
Score = 23.0 bits (47), Expect = 5.4
Identities = 9/15 (60%), Positives = 12/15 (80%)
Frame = +3
Query: 36 KRQTLMFSATFPEDI 80
+RQT +FSATF E +
Sbjct: 303 QRQTFIFSATFDEGL 317
>SPAP27G11.15 |slx1||structure-specific endonuclease catalytic
subunit |Schizosaccharomyces pombe|chr 1|||Manual
Length = 271
Score = 23.0 bits (47), Expect = 5.4
Identities = 6/22 (27%), Positives = 12/22 (54%)
Frame = -3
Query: 86 CCYILRESSGKHQGLTFVNGYP 21
CCY+L+ + + G ++ P
Sbjct: 8 CCYLLKSNRTQSSGAVYIGSTP 29
>SPBC354.02c |sec61||translocon alpha subunit
Sec61|Schizosaccharomyces pombe|chr 2|||Manual
Length = 479
Score = 23.0 bits (47), Expect = 5.4
Identities = 10/32 (31%), Positives = 17/32 (53%)
Frame = +3
Query: 3 LQEFGTRVPIDKRQTLMFSATFPEDIATLSGT 98
LQ+F +PI ++ + +TFP + S T
Sbjct: 267 LQDFRVEIPIRSQKFRGYRSTFPVKLLYTSNT 298
>SPBC17F3.01c |rga5|SPBC557.01|GTPase activating protein
Rga5|Schizosaccharomyces pombe|chr 2|||Manual
Length = 361
Score = 22.2 bits (45), Expect = 9.5
Identities = 11/31 (35%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
Frame = -3
Query: 92 AKCCYILRESSGKHQGLTFVNG-YPRAEFLQ 3
AKC + L++++ + +G+ VNG R + LQ
Sbjct: 72 AKCGFFLKQNATQVKGIFRVNGSSKRIQILQ 102
>SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 465
Score = 22.2 bits (45), Expect = 9.5
Identities = 10/25 (40%), Positives = 14/25 (56%)
Frame = +3
Query: 36 KRQTLMFSATFPEDIATLSGTYLEQ 110
+R+TL+FSAT + L L Q
Sbjct: 220 ERRTLLFSATMTSKVEKLQRASLHQ 244
>SPCC24B10.02c |||NAD/NADH kinase|Schizosaccharomyces pombe|chr
3|||Manual
Length = 449
Score = 22.2 bits (45), Expect = 9.5
Identities = 9/27 (33%), Positives = 13/27 (48%)
Frame = +3
Query: 24 VPIDKRQTLMFSATFPEDIATLSGTYL 104
+P+D R + FS E + G YL
Sbjct: 351 IPLDSRSSAFFSVDRHESVEMHRGDYL 377
>SPAC29E6.01 |pof11|SPAC30.05, mug156|F-box protein
Pof11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 506
Score = 22.2 bits (45), Expect = 9.5
Identities = 8/20 (40%), Positives = 14/20 (70%)
Frame = +3
Query: 54 FSATFPEDIATLSGTYLEQL 113
F+ FPE+++ +YL+QL
Sbjct: 72 FTEVFPEEVSLRVFSYLDQL 91
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 682,620
Number of Sequences: 5004
Number of extensions: 9461
Number of successful extensions: 32
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 32
length of database: 2,362,478
effective HSP length: 32
effective length of database: 2,202,350
effective search space used: 41844650
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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