Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0003_L09
(157 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC088362-1|AAH88362.1| 724|Homo sapiens DEAD (Asp-Glu-Ala-Asp) ... 36 0.018
BC047455-1|AAH47455.1| 690|Homo sapiens DDX4 protein protein. 36 0.018
AY004154-1|AAF86585.1| 724|Homo sapiens DEAD box RNA helicase p... 36 0.018
AL137462-1|CAB70750.1| 635|Homo sapiens hypothetical protein pr... 36 0.018
AF262962-1|AAF72705.1| 724|Homo sapiens VASA protein protein. 36 0.018
U50553-1|AAB95637.1| 662|Homo sapiens helicase like protein 2 p... 33 0.17
BC034942-1|AAH34942.1| 660|Homo sapiens DDX3Y protein protein. 33 0.17
BC011819-1|AAH11819.1| 662|Homo sapiens DEAD (Asp-Glu-Ala-Asp) ... 33 0.17
AY776161-1|AAV52794.1| 362|Homo sapiens unknown protein. 33 0.17
AL391647-2|CAI41416.1| 662|Homo sapiens DEAD (Asp-Glu-Ala-Asp) ... 33 0.17
AF061337-1|AAC34298.1| 662|Homo sapiens DEAD box RNA helicase D... 33 0.17
AF000985-1|AAC51832.1| 660|Homo sapiens dead box, Y isoform pro... 33 0.17
AF000984-1|AAC51831.1| 660|Homo sapiens dead box, Y isoform pro... 33 0.17
AF000983-1|AAC51830.1| 662|Homo sapiens dead box, X isoform pro... 33 0.17
AF000982-1|AAC51829.1| 662|Homo sapiens dead box, X isoform pro... 33 0.17
AB208983-1|BAD92220.1| 674|Homo sapiens DEAD/H (Asp-Glu-Ala-Asp... 33 0.17
AK123605-1|BAC85659.1| 143|Homo sapiens protein ( Homo sapiens ... 29 2.8
X52104-1|CAA36324.1| 614|Homo sapiens protein ( Human mRNA for ... 29 3.6
X15729-1|CAA33751.1| 614|Homo sapiens protein ( Human mRNA for ... 29 3.6
BX571764-1|CAE11890.1| 406|Homo sapiens hypothetical protein pr... 29 3.6
BT006943-1|AAP35589.1| 614|Homo sapiens DEAD/H (Asp-Glu-Ala-Asp... 29 3.6
BC016027-1|AAH16027.1| 614|Homo sapiens DEAD (Asp-Glu-Ala-Asp) ... 29 3.6
AF015812-1|AAB84094.1| 614|Homo sapiens RNA helicase p68 protein. 29 3.6
AB209919-1|BAD93156.1| 457|Homo sapiens Hypothetical protein DK... 29 3.6
BC066938-1|AAH66938.1| 648|Homo sapiens DEAD (Asp-Glu-Ala-Asp) ... 28 4.8
AJ278110-1|CAB92442.1| 648|Homo sapiens DEAD-box protein protein. 28 4.8
Z97056-3|CAB09792.1| 650|Homo sapiens DEAD (Asp-Glu-Ala-Asp) bo... 28 6.4
U59321-1|AAC50787.1| 650|Homo sapiens DEAD-box protein p72 prot... 28 6.4
CR456432-1|CAG30318.1| 652|Homo sapiens DDX17 protein. 28 6.4
BC000595-1|AAH00595.2| 729|Homo sapiens DEAD (Asp-Glu-Ala-Asp) ... 28 6.4
AB209595-1|BAD92832.1| 737|Homo sapiens DEAD box polypeptide 17... 28 6.4
BC067878-1|AAH67878.1| 631|Homo sapiens DEAD (Asp-Glu-Ala-Asp) ... 27 8.4
BC051703-1|AAH51703.1| 631|Homo sapiens DEAD (Asp-Glu-Ala-Asp) ... 27 8.4
BC002366-1|AAH02366.1| 820|Homo sapiens DEAD (Asp-Glu-Ala-Asp) ... 27 8.4
AY039237-1|AAK72102.1| 630|Homo sapiens DEAD-box protein CAGE p... 27 8.4
AF026402-1|AAB87902.1| 820|Homo sapiens U5 snRNP 100 kD protein... 27 8.4
>BC088362-1|AAH88362.1| 724|Homo sapiens DEAD (Asp-Glu-Ala-Asp) box
polypeptide 4 protein.
Length = 724
Score = 36.3 bits (80), Expect = 0.018
Identities = 15/25 (60%), Positives = 21/25 (84%)
Frame = +3
Query: 33 DKRQTLMFSATFPEDIATLSGTYLE 107
++RQTLMFSATFPE+I L+ +L+
Sbjct: 473 EQRQTLMFSATFPEEIQRLAAEFLK 497
Score = 31.9 bits (69), Expect = 0.39
Identities = 17/26 (65%), Positives = 18/26 (69%), Gaps = 1/26 (3%)
Frame = +1
Query: 82 QHLAGRIL-NNYLFVAVGIVGGASTD 156
Q LA L +NYLFVAVG VGGA D
Sbjct: 489 QRLAAEFLKSNYLFVAVGQVGGACRD 514
>BC047455-1|AAH47455.1| 690|Homo sapiens DDX4 protein protein.
Length = 690
Score = 36.3 bits (80), Expect = 0.018
Identities = 15/25 (60%), Positives = 21/25 (84%)
Frame = +3
Query: 33 DKRQTLMFSATFPEDIATLSGTYLE 107
++RQTLMFSATFPE+I L+ +L+
Sbjct: 439 EQRQTLMFSATFPEEIQRLAAEFLK 463
Score = 31.9 bits (69), Expect = 0.39
Identities = 17/26 (65%), Positives = 18/26 (69%), Gaps = 1/26 (3%)
Frame = +1
Query: 82 QHLAGRIL-NNYLFVAVGIVGGASTD 156
Q LA L +NYLFVAVG VGGA D
Sbjct: 455 QRLAAEFLKSNYLFVAVGQVGGACRD 480
>AY004154-1|AAF86585.1| 724|Homo sapiens DEAD box RNA helicase
protein.
Length = 724
Score = 36.3 bits (80), Expect = 0.018
Identities = 15/25 (60%), Positives = 21/25 (84%)
Frame = +3
Query: 33 DKRQTLMFSATFPEDIATLSGTYLE 107
++RQTLMFSATFPE+I L+ +L+
Sbjct: 473 EQRQTLMFSATFPEEIQRLAAEFLK 497
Score = 31.9 bits (69), Expect = 0.39
Identities = 17/26 (65%), Positives = 18/26 (69%), Gaps = 1/26 (3%)
Frame = +1
Query: 82 QHLAGRIL-NNYLFVAVGIVGGASTD 156
Q LA L +NYLFVAVG VGGA D
Sbjct: 489 QRLAAEFLKSNYLFVAVGQVGGACRD 514
>AL137462-1|CAB70750.1| 635|Homo sapiens hypothetical protein
protein.
Length = 635
Score = 36.3 bits (80), Expect = 0.018
Identities = 15/25 (60%), Positives = 21/25 (84%)
Frame = +3
Query: 33 DKRQTLMFSATFPEDIATLSGTYLE 107
++RQTLMFSATFPE+I L+ +L+
Sbjct: 384 EQRQTLMFSATFPEEIQRLAAEFLK 408
Score = 31.9 bits (69), Expect = 0.39
Identities = 17/26 (65%), Positives = 18/26 (69%), Gaps = 1/26 (3%)
Frame = +1
Query: 82 QHLAGRIL-NNYLFVAVGIVGGASTD 156
Q LA L +NYLFVAVG VGGA D
Sbjct: 400 QRLAAEFLKSNYLFVAVGQVGGACRD 425
>AF262962-1|AAF72705.1| 724|Homo sapiens VASA protein protein.
Length = 724
Score = 36.3 bits (80), Expect = 0.018
Identities = 15/25 (60%), Positives = 21/25 (84%)
Frame = +3
Query: 33 DKRQTLMFSATFPEDIATLSGTYLE 107
++RQTLMFSATFPE+I L+ +L+
Sbjct: 473 EQRQTLMFSATFPEEIQRLAAEFLK 497
Score = 31.9 bits (69), Expect = 0.39
Identities = 17/26 (65%), Positives = 18/26 (69%), Gaps = 1/26 (3%)
Frame = +1
Query: 82 QHLAGRIL-NNYLFVAVGIVGGASTD 156
Q LA L +NYLFVAVG VGGA D
Sbjct: 489 QRLAAEFLKSNYLFVAVGQVGGACRD 514
>U50553-1|AAB95637.1| 662|Homo sapiens helicase like protein 2
protein.
Length = 662
Score = 33.1 bits (72), Expect = 0.17
Identities = 15/36 (41%), Positives = 23/36 (63%)
Frame = +3
Query: 9 EFGTRVPIDKRQTLMFSATFPEDIATLSGTYLEQLL 116
E T P R T+MFSATFP++I L+ +L++ +
Sbjct: 366 EQDTMPPKGVRHTMMFSATFPKEIQMLARDFLDEYI 401
>BC034942-1|AAH34942.1| 660|Homo sapiens DDX3Y protein protein.
Length = 660
Score = 33.1 bits (72), Expect = 0.17
Identities = 15/36 (41%), Positives = 23/36 (63%)
Frame = +3
Query: 9 EFGTRVPIDKRQTLMFSATFPEDIATLSGTYLEQLL 116
E T P R T+MFSATFP++I L+ +L++ +
Sbjct: 364 EQDTMPPKGVRHTMMFSATFPKEIQMLARDFLDEYI 399
>BC011819-1|AAH11819.1| 662|Homo sapiens DEAD (Asp-Glu-Ala-Asp) box
polypeptide 3, X-linked protein.
Length = 662
Score = 33.1 bits (72), Expect = 0.17
Identities = 15/36 (41%), Positives = 23/36 (63%)
Frame = +3
Query: 9 EFGTRVPIDKRQTLMFSATFPEDIATLSGTYLEQLL 116
E T P R T+MFSATFP++I L+ +L++ +
Sbjct: 366 EQDTMPPKGVRHTMMFSATFPKEIQMLARDFLDEYI 401
>AY776161-1|AAV52794.1| 362|Homo sapiens unknown protein.
Length = 362
Score = 33.1 bits (72), Expect = 0.17
Identities = 15/36 (41%), Positives = 23/36 (63%)
Frame = +3
Query: 9 EFGTRVPIDKRQTLMFSATFPEDIATLSGTYLEQLL 116
E T P R T+MFSATFP++I L+ +L++ +
Sbjct: 83 EQDTMPPKGVRHTMMFSATFPKEIQMLARDFLDEYI 118
>AL391647-2|CAI41416.1| 662|Homo sapiens DEAD (Asp-Glu-Ala-Asp) box
polypeptide 3, X-linked protein.
Length = 662
Score = 33.1 bits (72), Expect = 0.17
Identities = 15/36 (41%), Positives = 23/36 (63%)
Frame = +3
Query: 9 EFGTRVPIDKRQTLMFSATFPEDIATLSGTYLEQLL 116
E T P R T+MFSATFP++I L+ +L++ +
Sbjct: 366 EQDTMPPKGVRHTMMFSATFPKEIQMLARDFLDEYI 401
>AF061337-1|AAC34298.1| 662|Homo sapiens DEAD box RNA helicase DDX3
protein.
Length = 662
Score = 33.1 bits (72), Expect = 0.17
Identities = 15/36 (41%), Positives = 23/36 (63%)
Frame = +3
Query: 9 EFGTRVPIDKRQTLMFSATFPEDIATLSGTYLEQLL 116
E T P R T+MFSATFP++I L+ +L++ +
Sbjct: 366 EQDTMPPKGVRHTMMFSATFPKEIQMLARDFLDEYI 401
>AF000985-1|AAC51832.1| 660|Homo sapiens dead box, Y isoform
protein.
Length = 660
Score = 33.1 bits (72), Expect = 0.17
Identities = 15/36 (41%), Positives = 23/36 (63%)
Frame = +3
Query: 9 EFGTRVPIDKRQTLMFSATFPEDIATLSGTYLEQLL 116
E T P R T+MFSATFP++I L+ +L++ +
Sbjct: 364 EQDTMPPKGVRHTMMFSATFPKEIQMLARDFLDEYI 399
>AF000984-1|AAC51831.1| 660|Homo sapiens dead box, Y isoform
protein.
Length = 660
Score = 33.1 bits (72), Expect = 0.17
Identities = 15/36 (41%), Positives = 23/36 (63%)
Frame = +3
Query: 9 EFGTRVPIDKRQTLMFSATFPEDIATLSGTYLEQLL 116
E T P R T+MFSATFP++I L+ +L++ +
Sbjct: 364 EQDTMPPKGVRHTMMFSATFPKEIQMLARDFLDEYI 399
>AF000983-1|AAC51830.1| 662|Homo sapiens dead box, X isoform
protein.
Length = 662
Score = 33.1 bits (72), Expect = 0.17
Identities = 15/36 (41%), Positives = 23/36 (63%)
Frame = +3
Query: 9 EFGTRVPIDKRQTLMFSATFPEDIATLSGTYLEQLL 116
E T P R T+MFSATFP++I L+ +L++ +
Sbjct: 366 EQDTMPPKGVRHTMMFSATFPKEIQMLARDFLDEYI 401
>AF000982-1|AAC51829.1| 662|Homo sapiens dead box, X isoform
protein.
Length = 662
Score = 33.1 bits (72), Expect = 0.17
Identities = 15/36 (41%), Positives = 23/36 (63%)
Frame = +3
Query: 9 EFGTRVPIDKRQTLMFSATFPEDIATLSGTYLEQLL 116
E T P R T+MFSATFP++I L+ +L++ +
Sbjct: 366 EQDTMPPKGVRHTMMFSATFPKEIQMLARDFLDEYI 401
>AB208983-1|BAD92220.1| 674|Homo sapiens DEAD/H
(Asp-Glu-Ala-Asp/His) box polypeptide 3 variant protein.
Length = 674
Score = 33.1 bits (72), Expect = 0.17
Identities = 15/36 (41%), Positives = 23/36 (63%)
Frame = +3
Query: 9 EFGTRVPIDKRQTLMFSATFPEDIATLSGTYLEQLL 116
E T P R T+MFSATFP++I L+ +L++ +
Sbjct: 378 EQDTMPPKGVRHTMMFSATFPKEIQMLARDFLDEYI 413
>AK123605-1|BAC85659.1| 143|Homo sapiens protein ( Homo sapiens
cDNA FLJ41611 fis, clone CTONG3002020. ).
Length = 143
Score = 29.1 bits (62), Expect = 2.8
Identities = 13/30 (43%), Positives = 15/30 (50%)
Frame = -3
Query: 107 FKIRPAKCCYILRESSGKHQGLTFVNGYPR 18
FK R CC + RE+S H T YPR
Sbjct: 71 FKCRKVLCCLVYREASFAHPVFTPCLSYPR 100
>X52104-1|CAA36324.1| 614|Homo sapiens protein ( Human mRNA for p68
protein. ).
Length = 614
Score = 28.7 bits (61), Expect = 3.6
Identities = 11/26 (42%), Positives = 20/26 (76%)
Frame = +3
Query: 39 RQTLMFSATFPEDIATLSGTYLEQLL 116
RQTLM+SAT+P+++ L+ +L+ +
Sbjct: 273 RQTLMWSATWPKEVRQLAEDFLKDYI 298
>X15729-1|CAA33751.1| 614|Homo sapiens protein ( Human mRNA for
nuclear p68 protein. ).
Length = 614
Score = 28.7 bits (61), Expect = 3.6
Identities = 11/26 (42%), Positives = 20/26 (76%)
Frame = +3
Query: 39 RQTLMFSATFPEDIATLSGTYLEQLL 116
RQTLM+SAT+P+++ L+ +L+ +
Sbjct: 273 RQTLMWSATWPKEVRQLAEDFLKDYI 298
>BX571764-1|CAE11890.1| 406|Homo sapiens hypothetical protein
protein.
Length = 406
Score = 28.7 bits (61), Expect = 3.6
Identities = 11/26 (42%), Positives = 20/26 (76%)
Frame = +3
Query: 39 RQTLMFSATFPEDIATLSGTYLEQLL 116
RQTLM+SAT+P+++ L+ +L+ +
Sbjct: 273 RQTLMWSATWPKEVRQLAEDFLKDYI 298
>BT006943-1|AAP35589.1| 614|Homo sapiens DEAD/H
(Asp-Glu-Ala-Asp/His) box polypeptide 5 (RNA helicase,
68kDa) protein.
Length = 614
Score = 28.7 bits (61), Expect = 3.6
Identities = 11/26 (42%), Positives = 20/26 (76%)
Frame = +3
Query: 39 RQTLMFSATFPEDIATLSGTYLEQLL 116
RQTLM+SAT+P+++ L+ +L+ +
Sbjct: 273 RQTLMWSATWPKEVRQLAEDFLKDYI 298
>BC016027-1|AAH16027.1| 614|Homo sapiens DEAD (Asp-Glu-Ala-Asp) box
polypeptide 5 protein.
Length = 614
Score = 28.7 bits (61), Expect = 3.6
Identities = 11/26 (42%), Positives = 20/26 (76%)
Frame = +3
Query: 39 RQTLMFSATFPEDIATLSGTYLEQLL 116
RQTLM+SAT+P+++ L+ +L+ +
Sbjct: 273 RQTLMWSATWPKEVRQLAEDFLKDYI 298
>AF015812-1|AAB84094.1| 614|Homo sapiens RNA helicase p68 protein.
Length = 614
Score = 28.7 bits (61), Expect = 3.6
Identities = 11/26 (42%), Positives = 20/26 (76%)
Frame = +3
Query: 39 RQTLMFSATFPEDIATLSGTYLEQLL 116
RQTLM+SAT+P+++ L+ +L+ +
Sbjct: 273 RQTLMWSATWPKEVRQLAEDFLKDYI 298
>AB209919-1|BAD93156.1| 457|Homo sapiens Hypothetical protein
DKFZp686J01190 variant protein.
Length = 457
Score = 28.7 bits (61), Expect = 3.6
Identities = 11/26 (42%), Positives = 20/26 (76%)
Frame = +3
Query: 39 RQTLMFSATFPEDIATLSGTYLEQLL 116
RQTLM+SAT+P+++ L+ +L+ +
Sbjct: 324 RQTLMWSATWPKEVRQLAEDFLKDYI 349
>BC066938-1|AAH66938.1| 648|Homo sapiens DEAD (Asp-Glu-Ala-Asp) box
polypeptide 43 protein.
Length = 648
Score = 28.3 bits (60), Expect = 4.8
Identities = 11/27 (40%), Positives = 20/27 (74%)
Frame = +3
Query: 39 RQTLMFSATFPEDIATLSGTYLEQLLV 119
RQT+M SAT+P + L+ +YL++ ++
Sbjct: 421 RQTVMTSATWPHSVHRLAQSYLKEPMI 447
>AJ278110-1|CAB92442.1| 648|Homo sapiens DEAD-box protein protein.
Length = 648
Score = 28.3 bits (60), Expect = 4.8
Identities = 11/27 (40%), Positives = 20/27 (74%)
Frame = +3
Query: 39 RQTLMFSATFPEDIATLSGTYLEQLLV 119
RQT+M SAT+P + L+ +YL++ ++
Sbjct: 421 RQTVMTSATWPHSVHRLAQSYLKEPMI 447
>Z97056-3|CAB09792.1| 650|Homo sapiens DEAD (Asp-Glu-Ala-Asp) box
polypeptide 17 protein.
Length = 650
Score = 27.9 bits (59), Expect = 6.4
Identities = 11/22 (50%), Positives = 18/22 (81%)
Frame = +3
Query: 39 RQTLMFSATFPEDIATLSGTYL 104
RQTLM+SAT+P+++ L+ +L
Sbjct: 271 RQTLMWSATWPKEVRQLAEDFL 292
>U59321-1|AAC50787.1| 650|Homo sapiens DEAD-box protein p72
protein.
Length = 650
Score = 27.9 bits (59), Expect = 6.4
Identities = 11/22 (50%), Positives = 18/22 (81%)
Frame = +3
Query: 39 RQTLMFSATFPEDIATLSGTYL 104
RQTLM+SAT+P+++ L+ +L
Sbjct: 271 RQTLMWSATWPKEVRQLAEDFL 292
>CR456432-1|CAG30318.1| 652|Homo sapiens DDX17 protein.
Length = 652
Score = 27.9 bits (59), Expect = 6.4
Identities = 11/22 (50%), Positives = 18/22 (81%)
Frame = +3
Query: 39 RQTLMFSATFPEDIATLSGTYL 104
RQTLM+SAT+P+++ L+ +L
Sbjct: 271 RQTLMWSATWPKEVRQLAEDFL 292
>BC000595-1|AAH00595.2| 729|Homo sapiens DEAD (Asp-Glu-Ala-Asp) box
polypeptide 17 protein.
Length = 729
Score = 27.9 bits (59), Expect = 6.4
Identities = 11/22 (50%), Positives = 18/22 (81%)
Frame = +3
Query: 39 RQTLMFSATFPEDIATLSGTYL 104
RQTLM+SAT+P+++ L+ +L
Sbjct: 350 RQTLMWSATWPKEVRQLAEDFL 371
>AB209595-1|BAD92832.1| 737|Homo sapiens DEAD box polypeptide 17
isoform p82 variant protein.
Length = 737
Score = 27.9 bits (59), Expect = 6.4
Identities = 11/22 (50%), Positives = 18/22 (81%)
Frame = +3
Query: 39 RQTLMFSATFPEDIATLSGTYL 104
RQTLM+SAT+P+++ L+ +L
Sbjct: 352 RQTLMWSATWPKEVRQLAEDFL 373
>BC067878-1|AAH67878.1| 631|Homo sapiens DEAD (Asp-Glu-Ala-Asp) box
polypeptide 53 protein.
Length = 631
Score = 27.5 bits (58), Expect = 8.4
Identities = 11/27 (40%), Positives = 20/27 (74%)
Frame = +3
Query: 39 RQTLMFSATFPEDIATLSGTYLEQLLV 119
RQT+M SAT+P+ + L+ +YL+ ++
Sbjct: 401 RQTVMTSATWPDTVRQLALSYLKDPMI 427
>BC051703-1|AAH51703.1| 631|Homo sapiens DEAD (Asp-Glu-Ala-Asp) box
polypeptide 53 protein.
Length = 631
Score = 27.5 bits (58), Expect = 8.4
Identities = 11/27 (40%), Positives = 20/27 (74%)
Frame = +3
Query: 39 RQTLMFSATFPEDIATLSGTYLEQLLV 119
RQT+M SAT+P+ + L+ +YL+ ++
Sbjct: 401 RQTVMTSATWPDTVRQLALSYLKDPMI 427
>BC002366-1|AAH02366.1| 820|Homo sapiens DEAD (Asp-Glu-Ala-Asp) box
polypeptide 23 protein.
Length = 820
Score = 27.5 bits (58), Expect = 8.4
Identities = 11/24 (45%), Positives = 17/24 (70%)
Frame = +3
Query: 39 RQTLMFSATFPEDIATLSGTYLEQ 110
RQT+MF+AT P + L+ +YL +
Sbjct: 600 RQTVMFTATMPPAVERLARSYLRR 623
>AY039237-1|AAK72102.1| 630|Homo sapiens DEAD-box protein CAGE
protein.
Length = 630
Score = 27.5 bits (58), Expect = 8.4
Identities = 11/27 (40%), Positives = 20/27 (74%)
Frame = +3
Query: 39 RQTLMFSATFPEDIATLSGTYLEQLLV 119
RQT+M SAT+P+ + L+ +YL+ ++
Sbjct: 401 RQTVMTSATWPDTVRQLALSYLKDPMI 427
>AF026402-1|AAB87902.1| 820|Homo sapiens U5 snRNP 100 kD protein
protein.
Length = 820
Score = 27.5 bits (58), Expect = 8.4
Identities = 11/24 (45%), Positives = 17/24 (70%)
Frame = +3
Query: 39 RQTLMFSATFPEDIATLSGTYLEQ 110
RQT+MF+AT P + L+ +YL +
Sbjct: 600 RQTVMFTATMPPAVERLARSYLRR 623
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,646,851
Number of Sequences: 237096
Number of extensions: 333208
Number of successful extensions: 1004
Number of sequences better than 10.0: 36
Number of HSP's better than 10.0 without gapping: 984
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1004
length of database: 76,859,062
effective HSP length: 31
effective length of database: 69,509,086
effective search space used: 1390181720
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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