Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0003_L09
(157 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U62772-1|AAB04136.1| 763|Caenorhabditis elegans RNA helicase pr... 31 0.084
U60449-1|AAB03510.1| 974|Caenorhabditis elegans GLH-2 protein. 31 0.084
U60194-1|AAB03337.1| 974|Caenorhabditis elegans RNA helicase GL... 31 0.084
L19948-1|AAC27384.1| 763|Caenorhabditis elegans RNA helicase pr... 31 0.084
AF079509-1|AAC28388.1| 720|Caenorhabditis elegans germline RNA ... 31 0.084
AF003145-4|AAB57719.1| 720|Caenorhabditis elegans Germ-line hel... 31 0.084
AF000197-1|AAB52901.2| 763|Caenorhabditis elegans Germ-line hel... 31 0.084
AC006625-11|AAK68269.1| 974|Caenorhabditis elegans Germ-line he... 31 0.084
Z81555-7|CAB04518.1| 561|Caenorhabditis elegans Hypothetical pr... 29 0.34
AC024859-14|AAY43989.1| 643|Caenorhabditis elegans Hypothetical... 29 0.34
AC024810-3|AAU20831.1| 660|Caenorhabditis elegans Vasa- and bel... 29 0.34
AC024810-2|AAK68520.1| 644|Caenorhabditis elegans Vasa- and bel... 29 0.34
AC024810-1|AAF60764.1| 641|Caenorhabditis elegans Vasa- and bel... 29 0.34
AC025726-23|AAK73934.1| 763|Caenorhabditis elegans Hypothetical... 27 1.4
AC024876-4|AAU05555.1| 825|Caenorhabditis elegans Hypothetical ... 27 1.4
AC024876-3|AAU05556.1| 871|Caenorhabditis elegans Hypothetical ... 27 1.4
Z54327-7|CAD57690.1| 268|Caenorhabditis elegans Hypothetical pr... 27 1.8
Z54327-6|CAA91120.1| 425|Caenorhabditis elegans Hypothetical pr... 27 2.4
EU051652-1|ABS85191.1| 973|Caenorhabditis elegans MEL-46 protein. 27 2.4
CU457744-1|CAM36366.2| 973|Caenorhabditis elegans Hypothetical ... 27 2.4
AC006665-5|AAF39907.1| 630|Caenorhabditis elegans Hypothetical ... 26 3.1
U41536-4|AAK39238.2| 419|Caenorhabditis elegans Defective fasci... 26 4.2
AF176087-1|AAD55066.1| 419|Caenorhabditis elegans nuclear hormo... 26 4.2
AF045641-1|AAK68386.1| 970|Caenorhabditis elegans Hypothetical ... 26 4.2
Z71178-3|CAA94876.2| 254|Caenorhabditis elegans Hypothetical pr... 25 5.5
U08102-1|AAB65852.1| 417|Caenorhabditis elegans putative RNA he... 25 5.5
U39852-6|AAK39259.1| 418|Caenorhabditis elegans Hypothetical pr... 25 7.3
U39676-5|AAN60531.1| 2329|Caenorhabditis elegans Hypothetical pr... 25 7.3
U39676-4|AAN60532.1| 2747|Caenorhabditis elegans Hypothetical pr... 25 7.3
Z81094-7|CAB03153.2| 960|Caenorhabditis elegans Hypothetical pr... 25 9.6
Z70782-5|CAA94843.1| 322|Caenorhabditis elegans Hypothetical pr... 25 9.6
AF100669-1|AAK39265.1| 931|Caenorhabditis elegans Hypothetical ... 25 9.6
>U62772-1|AAB04136.1| 763|Caenorhabditis elegans RNA helicase
protein.
Length = 763
Score = 31.5 bits (68), Expect = 0.084
Identities = 12/26 (46%), Positives = 18/26 (69%)
Frame = +3
Query: 33 DKRQTLMFSATFPEDIATLSGTYLEQ 110
+ RQTLMFSATFP+ + + +L +
Sbjct: 527 ENRQTLMFSATFPDSVQEAARAFLRE 552
>U60449-1|AAB03510.1| 974|Caenorhabditis elegans GLH-2 protein.
Length = 974
Score = 31.5 bits (68), Expect = 0.084
Identities = 12/26 (46%), Positives = 19/26 (73%)
Frame = +3
Query: 33 DKRQTLMFSATFPEDIATLSGTYLEQ 110
+ RQTLMFSATFP+ + + +L++
Sbjct: 738 ENRQTLMFSATFPDSVQEAARNHLKE 763
>U60194-1|AAB03337.1| 974|Caenorhabditis elegans RNA helicase GLH-2
protein.
Length = 974
Score = 31.5 bits (68), Expect = 0.084
Identities = 12/26 (46%), Positives = 19/26 (73%)
Frame = +3
Query: 33 DKRQTLMFSATFPEDIATLSGTYLEQ 110
+ RQTLMFSATFP+ + + +L++
Sbjct: 738 ENRQTLMFSATFPDSVQEAARNHLKE 763
>L19948-1|AAC27384.1| 763|Caenorhabditis elegans RNA helicase
protein.
Length = 763
Score = 31.5 bits (68), Expect = 0.084
Identities = 12/26 (46%), Positives = 18/26 (69%)
Frame = +3
Query: 33 DKRQTLMFSATFPEDIATLSGTYLEQ 110
+ RQTLMFSATFP+ + + +L +
Sbjct: 527 ENRQTLMFSATFPDSVQEAARAFLRE 552
>AF079509-1|AAC28388.1| 720|Caenorhabditis elegans germline RNA
helicase-3 protein.
Length = 720
Score = 31.5 bits (68), Expect = 0.084
Identities = 12/16 (75%), Positives = 14/16 (87%)
Frame = +3
Query: 33 DKRQTLMFSATFPEDI 80
DKRQT+MFSATFP +
Sbjct: 484 DKRQTMMFSATFPSSV 499
>AF003145-4|AAB57719.1| 720|Caenorhabditis elegans Germ-line
helicase protein 3 protein.
Length = 720
Score = 31.5 bits (68), Expect = 0.084
Identities = 12/16 (75%), Positives = 14/16 (87%)
Frame = +3
Query: 33 DKRQTLMFSATFPEDI 80
DKRQT+MFSATFP +
Sbjct: 484 DKRQTMMFSATFPSSV 499
>AF000197-1|AAB52901.2| 763|Caenorhabditis elegans Germ-line
helicase protein 1 protein.
Length = 763
Score = 31.5 bits (68), Expect = 0.084
Identities = 12/26 (46%), Positives = 18/26 (69%)
Frame = +3
Query: 33 DKRQTLMFSATFPEDIATLSGTYLEQ 110
+ RQTLMFSATFP+ + + +L +
Sbjct: 527 ENRQTLMFSATFPDSVQEAARAFLRE 552
>AC006625-11|AAK68269.1| 974|Caenorhabditis elegans Germ-line
helicase protein 2 protein.
Length = 974
Score = 31.5 bits (68), Expect = 0.084
Identities = 12/26 (46%), Positives = 19/26 (73%)
Frame = +3
Query: 33 DKRQTLMFSATFPEDIATLSGTYLEQ 110
+ RQTLMFSATFP+ + + +L++
Sbjct: 738 ENRQTLMFSATFPDSVQEAARNHLKE 763
>Z81555-7|CAB04518.1| 561|Caenorhabditis elegans Hypothetical
protein F58E10.3a protein.
Length = 561
Score = 29.5 bits (63), Expect = 0.34
Identities = 11/21 (52%), Positives = 17/21 (80%)
Frame = +3
Query: 39 RQTLMFSATFPEDIATLSGTY 101
RQTLMFSAT+P+++ L+ +
Sbjct: 308 RQTLMFSATWPKEVRALASDF 328
>AC024859-14|AAY43989.1| 643|Caenorhabditis elegans Hypothetical
protein Y71H2AM.19 protein.
Length = 643
Score = 29.5 bits (63), Expect = 0.34
Identities = 12/26 (46%), Positives = 20/26 (76%)
Frame = +3
Query: 33 DKRQTLMFSATFPEDIATLSGTYLEQ 110
++R T MFSATFP++I L+ +L++
Sbjct: 359 EERITAMFSATFPKEIQLLAQDFLKE 384
>AC024810-3|AAU20831.1| 660|Caenorhabditis elegans Vasa- and
belle-like helicase protein1, isoform c protein.
Length = 660
Score = 29.5 bits (63), Expect = 0.34
Identities = 13/27 (48%), Positives = 18/27 (66%)
Frame = +3
Query: 27 PIDKRQTLMFSATFPEDIATLSGTYLE 107
P R T MFSATFP++I L+ +L+
Sbjct: 328 PKTARTTAMFSATFPKEIQVLAKDFLK 354
>AC024810-2|AAK68520.1| 644|Caenorhabditis elegans Vasa- and
belle-like helicase protein1, isoform b protein.
Length = 644
Score = 29.5 bits (63), Expect = 0.34
Identities = 13/27 (48%), Positives = 18/27 (66%)
Frame = +3
Query: 27 PIDKRQTLMFSATFPEDIATLSGTYLE 107
P R T MFSATFP++I L+ +L+
Sbjct: 312 PKTARTTAMFSATFPKEIQVLAKDFLK 338
>AC024810-1|AAF60764.1| 641|Caenorhabditis elegans Vasa- and
belle-like helicase protein1, isoform a protein.
Length = 641
Score = 29.5 bits (63), Expect = 0.34
Identities = 13/27 (48%), Positives = 18/27 (66%)
Frame = +3
Query: 27 PIDKRQTLMFSATFPEDIATLSGTYLE 107
P R T MFSATFP++I L+ +L+
Sbjct: 309 PKTARTTAMFSATFPKEIQVLAKDFLK 335
>AC025726-23|AAK73934.1| 763|Caenorhabditis elegans Hypothetical
protein Y71G12B.8 protein.
Length = 763
Score = 27.5 bits (58), Expect = 1.4
Identities = 13/30 (43%), Positives = 19/30 (63%)
Frame = +3
Query: 21 RVPIDKRQTLMFSATFPEDIATLSGTYLEQ 110
R+ RQTL+FSAT E+I L+ L++
Sbjct: 344 RLCAQNRQTLLFSATMTEEIDELASMSLQK 373
>AC024876-4|AAU05555.1| 825|Caenorhabditis elegans Hypothetical
protein Y94H6A.5a protein.
Length = 825
Score = 27.5 bits (58), Expect = 1.4
Identities = 17/41 (41%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
Frame = +3
Query: 3 LQEFGTRVPIDKRQTLMFSATFPEDIATLSGTYL-EQLLVR 122
L E R+P + RQTL+FSAT P+ + + L + +LVR
Sbjct: 188 LTETLKRIP-ESRQTLLFSATLPKMLVDFAKAGLTDPMLVR 227
>AC024876-3|AAU05556.1| 871|Caenorhabditis elegans Hypothetical
protein Y94H6A.5b protein.
Length = 871
Score = 27.5 bits (58), Expect = 1.4
Identities = 17/41 (41%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
Frame = +3
Query: 3 LQEFGTRVPIDKRQTLMFSATFPEDIATLSGTYL-EQLLVR 122
L E R+P + RQTL+FSAT P+ + + L + +LVR
Sbjct: 188 LTETLKRIP-ESRQTLLFSATLPKMLVDFAKAGLTDPMLVR 227
>Z54327-7|CAD57690.1| 268|Caenorhabditis elegans Hypothetical
protein C26D10.2b protein.
Length = 268
Score = 27.1 bits (57), Expect = 1.8
Identities = 11/37 (29%), Positives = 23/37 (62%)
Frame = +3
Query: 3 LQEFGTRVPIDKRQTLMFSATFPEDIATLSGTYLEQL 113
+QE P ++Q +MFSAT P+++ T+ +++ +
Sbjct: 207 VQEIVKMTP-QQKQVMMFSATLPKELRTVCKRFMQDV 242
>Z54327-6|CAA91120.1| 425|Caenorhabditis elegans Hypothetical
protein C26D10.2a protein.
Length = 425
Score = 26.6 bits (56), Expect = 2.4
Identities = 11/35 (31%), Positives = 22/35 (62%)
Frame = +3
Query: 3 LQEFGTRVPIDKRQTLMFSATFPEDIATLSGTYLE 107
+QE P ++Q +MFSAT P+++ T+ +++
Sbjct: 207 VQEIVKMTP-QQKQVMMFSATLPKELRTVCKRFMQ 240
>EU051652-1|ABS85191.1| 973|Caenorhabditis elegans MEL-46 protein.
Length = 973
Score = 26.6 bits (56), Expect = 2.4
Identities = 13/29 (44%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
Frame = +3
Query: 39 RQTLMFSATFPEDIATLSGTYL-EQLLVR 122
RQ +FSAT+P ++ L T+L + LVR
Sbjct: 196 RQVAVFSATYPRNLDNLLSTFLRDAALVR 224
>CU457744-1|CAM36366.2| 973|Caenorhabditis elegans Hypothetical
protein T06A10.1 protein.
Length = 973
Score = 26.6 bits (56), Expect = 2.4
Identities = 13/29 (44%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
Frame = +3
Query: 39 RQTLMFSATFPEDIATLSGTYL-EQLLVR 122
RQ +FSAT+P ++ L T+L + LVR
Sbjct: 196 RQVAVFSATYPRNLDNLLSTFLRDAALVR 224
>AC006665-5|AAF39907.1| 630|Caenorhabditis elegans Hypothetical
protein H27M09.1 protein.
Length = 630
Score = 26.2 bits (55), Expect = 3.1
Identities = 14/33 (42%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
Frame = +3
Query: 36 KRQTLMFSATFPEDIATLSGTYL-EQLLVRSGR 131
+RQTL+FSAT P I + + L + ++V GR
Sbjct: 377 QRQTLLFSATMPRKIQFFAKSALVKPIVVNVGR 409
>U41536-4|AAK39238.2| 419|Caenorhabditis elegans Defective
fasciculation of axonsprotein 1 protein.
Length = 419
Score = 25.8 bits (54), Expect = 4.2
Identities = 11/24 (45%), Positives = 14/24 (58%), Gaps = 1/24 (4%)
Frame = -3
Query: 95 PAKCCYILRE-SSGKHQGLTFVNG 27
P CC + + SSGKH G+ NG
Sbjct: 98 PTLCCAVCGDVSSGKHYGILACNG 121
>AF176087-1|AAD55066.1| 419|Caenorhabditis elegans nuclear hormone
receptor FAX-1 protein.
Length = 419
Score = 25.8 bits (54), Expect = 4.2
Identities = 11/24 (45%), Positives = 14/24 (58%), Gaps = 1/24 (4%)
Frame = -3
Query: 95 PAKCCYILRE-SSGKHQGLTFVNG 27
P CC + + SSGKH G+ NG
Sbjct: 98 PTLCCAVCGDVSSGKHYGILACNG 121
>AF045641-1|AAK68386.1| 970|Caenorhabditis elegans Hypothetical
protein F53H1.1 protein.
Length = 970
Score = 25.8 bits (54), Expect = 4.2
Identities = 10/24 (41%), Positives = 17/24 (70%)
Frame = +3
Query: 39 RQTLMFSATFPEDIATLSGTYLEQ 110
+QT++FSATFP + L+ L++
Sbjct: 486 KQTVLFSATFPRHMEALARKVLDK 509
>Z71178-3|CAA94876.2| 254|Caenorhabditis elegans Hypothetical
protein B0024.3 protein.
Length = 254
Score = 25.4 bits (53), Expect = 5.5
Identities = 10/23 (43%), Positives = 13/23 (56%)
Frame = -3
Query: 95 PAKCCYILRESSGKHQGLTFVNG 27
P C Y + E G+ Q +TF NG
Sbjct: 141 PVMCEYQIGEDDGQLQNVTFANG 163
>U08102-1|AAB65852.1| 417|Caenorhabditis elegans putative RNA
helicase protein.
Length = 417
Score = 25.4 bits (53), Expect = 5.5
Identities = 8/23 (34%), Positives = 17/23 (73%)
Frame = +3
Query: 39 RQTLMFSATFPEDIATLSGTYLE 107
+Q +MFSAT P+++ T+ +++
Sbjct: 210 KQVMMFSATLPKELRTVCKRFMQ 232
>U39852-6|AAK39259.1| 418|Caenorhabditis elegans Hypothetical
protein K10C2.4 protein.
Length = 418
Score = 25.0 bits (52), Expect = 7.3
Identities = 10/23 (43%), Positives = 13/23 (56%)
Frame = +3
Query: 9 EFGTRVPIDKRQTLMFSATFPED 77
E GTRVPI+K + +F D
Sbjct: 213 ELGTRVPIEKAEDRIFGVVLMND 235
>U39676-5|AAN60531.1| 2329|Caenorhabditis elegans Hypothetical
protein C23F12.1a protein.
Length = 2329
Score = 25.0 bits (52), Expect = 7.3
Identities = 9/17 (52%), Positives = 14/17 (82%)
Frame = -1
Query: 94 PLSVAISSGKVAENIRV 44
PLSVA++ GKV N+++
Sbjct: 151 PLSVAVNQGKVPNNVQM 167
>U39676-4|AAN60532.1| 2747|Caenorhabditis elegans Hypothetical
protein C23F12.1b protein.
Length = 2747
Score = 25.0 bits (52), Expect = 7.3
Identities = 9/17 (52%), Positives = 14/17 (82%)
Frame = -1
Query: 94 PLSVAISSGKVAENIRV 44
PLSVA++ GKV N+++
Sbjct: 151 PLSVAVNQGKVPNNVQM 167
>Z81094-7|CAB03153.2| 960|Caenorhabditis elegans Hypothetical
protein F58G11.2 protein.
Length = 960
Score = 24.6 bits (51), Expect = 9.6
Identities = 10/25 (40%), Positives = 17/25 (68%)
Frame = +3
Query: 39 RQTLMFSATFPEDIATLSGTYLEQL 113
RQT+M SATF + T++ +++L
Sbjct: 573 RQTIMTSATFNASVMTVANELMKRL 597
>Z70782-5|CAA94843.1| 322|Caenorhabditis elegans Hypothetical
protein R04B5.7 protein.
Length = 322
Score = 24.6 bits (51), Expect = 9.6
Identities = 10/30 (33%), Positives = 15/30 (50%)
Frame = +3
Query: 24 VPIDKRQTLMFSATFPEDIATLSGTYLEQL 113
VP+ M AT+PE +YL+Q+
Sbjct: 170 VPVPPAPQPMLQATYPEQRTVFGPSYLQQM 199
>AF100669-1|AAK39265.1| 931|Caenorhabditis elegans Hypothetical
protein R11E3.3 protein.
Length = 931
Score = 24.6 bits (51), Expect = 9.6
Identities = 14/45 (31%), Positives = 20/45 (44%), Gaps = 1/45 (2%)
Frame = +3
Query: 21 RVPIDKR-QTLMFSATFPEDIATLSGTYLEQLLVRSGRHRRWSKY 152
+VP K LM + I G YL + L+R+ WSK+
Sbjct: 482 KVPTKKLCNDLMEAQGIEPKIKLWLGNYLHKRLIRTSHDNHWSKW 526
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,895,805
Number of Sequences: 27780
Number of extensions: 55803
Number of successful extensions: 158
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 148
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 158
length of database: 12,740,198
effective HSP length: 32
effective length of database: 11,851,238
effective search space used: 225173522
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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