Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0003_L09
(157 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
DQ288391-1|ABC41341.1| 630|Apis mellifera vasa protein protein. 45 7e-08
DQ201783-1|ABB05503.1| 381|Apis mellifera capa receptor-like GP... 20 3.2
AY823258-1|AAX18443.1| 145|Apis mellifera pburs protein. 19 5.6
AY331183-1|AAP94623.1| 953|Apis mellifera NMDA-type glutamate r... 19 5.6
AM420632-1|CAM06632.1| 145|Apis mellifera bursicon subunit beta... 19 5.6
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ... 19 5.6
AB050744-1|BAB17753.1| 238|Apis mellifera period protein protein. 19 5.6
DQ257631-1|ABB82366.1| 424|Apis mellifera yellow e3-like protei... 19 7.4
DQ435325-1|ABD92640.1| 160|Apis mellifera OBP7 protein. 18 9.8
AF393494-1|AAL60419.1| 144|Apis mellifera odorant binding prote... 18 9.8
AF166496-1|AAD51944.1| 144|Apis mellifera pheromone-binding pro... 18 9.8
>DQ288391-1|ABC41341.1| 630|Apis mellifera vasa protein protein.
Length = 630
Score = 45.2 bits (102), Expect = 7e-08
Identities = 20/25 (80%), Positives = 22/25 (88%)
Frame = +1
Query: 82 QHLAGRILNNYLFVAVGIVGGASTD 156
QHLA R LNNYLF+AVGIVGGA +D
Sbjct: 397 QHLARRFLNNYLFLAVGIVGGACSD 421
Score = 39.9 bits (89), Expect = 3e-06
Identities = 17/33 (51%), Positives = 24/33 (72%)
Frame = +3
Query: 18 TRVPIDKRQTLMFSATFPEDIATLSGTYLEQLL 116
T VP+ +RQTLMFSATFP+++ L+ +L L
Sbjct: 376 TMVPLGERQTLMFSATFPDEVQHLARRFLNNYL 408
>DQ201783-1|ABB05503.1| 381|Apis mellifera capa receptor-like GPCR
protein.
Length = 381
Score = 19.8 bits (39), Expect = 3.2
Identities = 8/18 (44%), Positives = 11/18 (61%)
Frame = -3
Query: 152 VLAPPTMPTATNK*LFKI 99
++ P M TATN LF +
Sbjct: 65 IIKNPAMQTATNYYLFSL 82
>AY823258-1|AAX18443.1| 145|Apis mellifera pburs protein.
Length = 145
Score = 19.0 bits (37), Expect = 5.6
Identities = 9/23 (39%), Positives = 13/23 (56%)
Frame = -3
Query: 92 AKCCYILRESSGKHQGLTFVNGY 24
+K CY RES K + +T + Y
Sbjct: 88 SKECYCCRESYLKERHITLHHCY 110
>AY331183-1|AAP94623.1| 953|Apis mellifera NMDA-type glutamate
receptor 1 protein.
Length = 953
Score = 19.0 bits (37), Expect = 5.6
Identities = 6/11 (54%), Positives = 9/11 (81%)
Frame = +1
Query: 112 YLFVAVGIVGG 144
++ V VGI+GG
Sbjct: 827 FIVVGVGIIGG 837
>AM420632-1|CAM06632.1| 145|Apis mellifera bursicon subunit beta
protein precursor protein.
Length = 145
Score = 19.0 bits (37), Expect = 5.6
Identities = 9/23 (39%), Positives = 13/23 (56%)
Frame = -3
Query: 92 AKCCYILRESSGKHQGLTFVNGY 24
+K CY RES K + +T + Y
Sbjct: 88 SKECYCCRESYLKERHITLHHCY 110
>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
protein.
Length = 1124
Score = 19.0 bits (37), Expect = 5.6
Identities = 9/19 (47%), Positives = 11/19 (57%), Gaps = 1/19 (5%)
Frame = +2
Query: 14 RHEGT-H*QTSDPDVFRYF 67
RH T + DPDV +YF
Sbjct: 313 RHNATCYLSHVDPDVVQYF 331
Score = 19.0 bits (37), Expect = 5.6
Identities = 8/22 (36%), Positives = 14/22 (63%)
Frame = -1
Query: 115 SNCSRYVPLSVAISSGKVAENI 50
+N + + PLSV+I A+N+
Sbjct: 752 ANVNLWQPLSVSIPPPPSAQNV 773
>AB050744-1|BAB17753.1| 238|Apis mellifera period protein
protein.
Length = 238
Score = 19.0 bits (37), Expect = 5.6
Identities = 9/19 (47%), Positives = 11/19 (57%), Gaps = 1/19 (5%)
Frame = +2
Query: 14 RHEGT-H*QTSDPDVFRYF 67
RH T + DPDV +YF
Sbjct: 19 RHNATCYLSHVDPDVVQYF 37
>DQ257631-1|ABB82366.1| 424|Apis mellifera yellow e3-like protein
protein.
Length = 424
Score = 18.6 bits (36), Expect = 7.4
Identities = 8/15 (53%), Positives = 10/15 (66%)
Frame = -1
Query: 100 YVPLSVAISSGKVAE 56
+VP S+ SS VAE
Sbjct: 298 FVPFSIERSSQSVAE 312
>DQ435325-1|ABD92640.1| 160|Apis mellifera OBP7 protein.
Length = 160
Score = 18.2 bits (35), Expect = 9.8
Identities = 8/17 (47%), Positives = 9/17 (52%)
Frame = -3
Query: 53 HQGLTFVNGYPRAEFLQ 3
H GLTF + E LQ
Sbjct: 43 HMGLTFKDFIKMQELLQ 59
>AF393494-1|AAL60419.1| 144|Apis mellifera odorant binding protein
ASP1 protein.
Length = 144
Score = 18.2 bits (35), Expect = 9.8
Identities = 8/12 (66%), Positives = 8/12 (66%)
Frame = -2
Query: 69 GK*RKTSGSDVC 34
GK TSGSD C
Sbjct: 112 GKCLPTSGSDNC 123
>AF166496-1|AAD51944.1| 144|Apis mellifera pheromone-binding
protein ASP1 protein.
Length = 144
Score = 18.2 bits (35), Expect = 9.8
Identities = 8/12 (66%), Positives = 8/12 (66%)
Frame = -2
Query: 69 GK*RKTSGSDVC 34
GK TSGSD C
Sbjct: 112 GKCLPTSGSDNC 123
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 49,591
Number of Sequences: 438
Number of extensions: 655
Number of successful extensions: 13
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 31
effective length of database: 132,765
effective search space used: 2655300
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 35 (18.9 bits)
- SilkBase 1999-2023 -