Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0003_L08
         (313 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC790.03 |||rhomboid family protease|Schizosaccharomyces pombe...    26   1.5  
SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein Cap1|S...    24   6.1  
SPBC1105.08 |||EMP70 family|Schizosaccharomyces pombe|chr 2|||Ma...    24   6.1  
SPAC17C9.14 |||Pex19 protein family|Schizosaccharomyces pombe|ch...    23   8.1  
SPAC6F12.15c |cut9|dre1|anaphase-promoting complex subunit Cut9|...    23   8.1  
SPAC11H11.04 |mam2||pheromone p-factor receptor|Schizosaccharomy...    23   8.1  
SPAC12B10.14c |ppk2||serine/threonine protein kinase Ppk2 |Schiz...    23   8.1  

>SPCC790.03 |||rhomboid family protease|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 248

 Score = 25.8 bits (54), Expect = 1.5
 Identities = 14/38 (36%), Positives = 21/38 (55%)
 Frame = +2

Query: 35  TLHLSHHYFIHSFVFRLPAAPQPAIMNRSLIILLVSCV 148
           TLHLS  + + +FV  LPA  Q      +L  +LV+ +
Sbjct: 61  TLHLSMLHIVFNFVSLLPAMSQFEKKQGTLACILVTVI 98


>SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein
           Cap1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 551

 Score = 23.8 bits (49), Expect = 6.1
 Identities = 13/53 (24%), Positives = 25/53 (47%)
 Frame = +2

Query: 65  HSFVFRLPAAPQPAIMNRSLIILLVSCVLAAAMVPRSRRSVTTNNENSSTANI 223
           H+  F +     P +   S  +  +   +AAA+ PR+R   +T+   +  A+I
Sbjct: 54  HNISFNIGTPTAPTVSTGSPAVASLHDQVAAAISPRNRSLTSTSAVEAVPASI 106


>SPBC1105.08 |||EMP70 family|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 629

 Score = 23.8 bits (49), Expect = 6.1
 Identities = 8/18 (44%), Positives = 10/18 (55%)
 Frame = -1

Query: 154 GENARNKEYYQTSIHYCR 101
           G +  N EYY    H+CR
Sbjct: 59  GSDIFNYEYYDERFHFCR 76


>SPAC17C9.14 |||Pex19 protein family|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 232

 Score = 23.4 bits (48), Expect = 8.1
 Identities = 11/27 (40%), Positives = 13/27 (48%)
 Frame = -3

Query: 188 LPNALILGP*RRRERTKQGVLSNFDSL 108
           + N  I G   R+E TK     NFD L
Sbjct: 1   MSNPTIEGDENRKENTKSNTKPNFDDL 27


>SPAC6F12.15c |cut9|dre1|anaphase-promoting complex subunit
           Cut9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 671

 Score = 23.4 bits (48), Expect = 8.1
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = +2

Query: 152 AAAMVPRSRRSVTTNNENSSTANIKICAPQT 244
           AA M P S  ++  NN NS  + + I +P T
Sbjct: 28  AAYMTPPSMGALNANNSNSQLSTLTI-SPMT 57


>SPAC11H11.04 |mam2||pheromone p-factor receptor|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 348

 Score = 23.4 bits (48), Expect = 8.1
 Identities = 10/21 (47%), Positives = 13/21 (61%), Gaps = 2/21 (9%)
 Frame = +3

Query: 21  SCRC--APCIYLITISFIHSY 77
           SC+C   P  + I  SFIH+Y
Sbjct: 254 SCQCLIVPATFTIIDSFIHTY 274


>SPAC12B10.14c |ppk2||serine/threonine protein kinase Ppk2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 665

 Score = 23.4 bits (48), Expect = 8.1
 Identities = 19/64 (29%), Positives = 32/64 (50%), Gaps = 1/64 (1%)
 Frame = +2

Query: 119 SLIILLVSCVLAAAMVPRSRRSVTTNNENSSTANIKICAPQTPCAWSV-YRPTGRIIHMN 295
           SL  +L S  L++  VP +   V+TN  +SST+++  C    P  +++  RP       +
Sbjct: 182 SLPTVLNSQALSSPPVPTTPDEVSTNRLSSSTSSMN-CRNLVPDNFNISIRPNTTNYRSS 240

Query: 296 IATN 307
           I  N
Sbjct: 241 IQEN 244


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,321,239
Number of Sequences: 5004
Number of extensions: 24911
Number of successful extensions: 67
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 67
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 67
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 81889040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)