Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0003_L08
(313 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0390 + 8056006-8057502 29 1.0
09_02_0070 - 3844270-3846228 27 3.1
04_04_1563 - 34445832-34445891,34445981-34446097,34447363-344474... 27 3.1
06_03_1475 - 30391555-30391890,30391982-30392233,30392358-303926... 27 4.1
11_06_0344 + 22540436-22540737,22541304-22543545 26 5.4
10_03_0004 + 6891171-6891287,6891393-6891577,6891657-6891714,689... 26 5.4
06_01_1032 + 8055678-8055782,8055875-8055936,8057302-8057507,805... 26 5.4
10_08_0776 + 20486875-20487013,20487277-20487458 26 7.2
07_03_0636 + 20168180-20168462,20168961-20170303,20170401-201706... 26 7.2
06_02_0079 - 11512747-11512770,11513281-11513321,11513409-115135... 26 7.2
03_06_0497 - 34332310-34334415 26 7.2
02_03_0249 + 16826157-16827578,16827775-16827777 26 7.2
12_02_1059 - 25744184-25745334,25745595-25746262,25747376-25747902 25 9.5
04_04_0824 - 28399144-28399385,28400193-28400312,28400422-284004... 25 9.5
>03_02_0390 + 8056006-8057502
Length = 498
Score = 28.7 bits (61), Expect = 1.0
Identities = 17/43 (39%), Positives = 23/43 (53%), Gaps = 3/43 (6%)
Frame = -3
Query: 131 VLSNFDSLLPAAVLPV---NEIRMNE*NSDEINARCASARGGT 12
VLS+FD LPA+V P ++R + I C SA GG+
Sbjct: 245 VLSDFDLALPASVEPAVRRRQVRKLSRRKNRIVPSCFSANGGS 287
>09_02_0070 - 3844270-3846228
Length = 652
Score = 27.1 bits (57), Expect = 3.1
Identities = 17/40 (42%), Positives = 23/40 (57%)
Frame = +2
Query: 59 FIHSFVFRLPAAPQPAIMNRSLIILLVSCVLAAAMVPRSR 178
F SFVF PAA +PA SL LL+ +LA + ++R
Sbjct: 80 FSTSFVFASPAAARPA---SSLSFLLLPDLLAEGLAAKNR 116
>04_04_1563 -
34445832-34445891,34445981-34446097,34447363-34447450,
34447626-34447675,34447848-34448285
Length = 250
Score = 27.1 bits (57), Expect = 3.1
Identities = 15/38 (39%), Positives = 21/38 (55%)
Frame = +2
Query: 140 SCVLAAAMVPRSRRSVTTNNENSSTANIKICAPQTPCA 253
SC A+ PR RRS TT + + I++C +T CA
Sbjct: 10 SCSFAS---PRHRRSPTTARASGAAVEIRVCTNRT-CA 43
>06_03_1475 -
30391555-30391890,30391982-30392233,30392358-30392619,
30393232-30393320,30393408-30393592,30393673-30393781,
30393886-30393942,30394047-30394196
Length = 479
Score = 26.6 bits (56), Expect = 4.1
Identities = 7/13 (53%), Positives = 13/13 (100%)
Frame = +3
Query: 129 YSLFRAFSPPLWS 167
YS+FR+++PP+W+
Sbjct: 8 YSVFRSYAPPIWA 20
>11_06_0344 + 22540436-22540737,22541304-22543545
Length = 847
Score = 26.2 bits (55), Expect = 5.4
Identities = 9/17 (52%), Positives = 10/17 (58%)
Frame = +3
Query: 3 TRPRAASCRCAPCIYLI 53
TR RA C C PC Y +
Sbjct: 326 TRRRACDCECNPCSYQV 342
>10_03_0004 +
6891171-6891287,6891393-6891577,6891657-6891714,
6893517-6893834
Length = 225
Score = 26.2 bits (55), Expect = 5.4
Identities = 15/40 (37%), Positives = 20/40 (50%)
Frame = +2
Query: 119 SLIILLVSCVLAAAMVPRSRRSVTTNNENSSTANIKICAP 238
SLIIL+VSC L A V TT + +S + +P
Sbjct: 114 SLIILVVSCNLRGAAVLAQMSGDTTPSRGASLTRSRCSSP 153
>06_01_1032 + 8055678-8055782,8055875-8055936,8057302-8057507,
8057595-8058314,8058404-8058603,8058988-8059172,
8059287-8059354,8059432-8060246,8060502-8060599,
8060702-8060887,8061358-8061538,8061651-8061812,
8061894-8061937,8062059-8062115,8062409-8062505,
8062614-8062786,8062868-8063081,8063270-8063395,
8064072-8064188,8064459-8064566,8064729-8064898,
8065049-8065127,8065211-8065285,8065845-8065942,
8066030-8066137,8066238-8066295,8066527-8066631,
8067461-8069516,8069804-8070697,8070896-8071852,
8072022-8072075,8072157-8072222,8072294-8073472,
8073868-8075598,8075764-8075829,8076763-8077788,
8077893-8078041
Length = 4264
Score = 26.2 bits (55), Expect = 5.4
Identities = 10/29 (34%), Positives = 16/29 (55%)
Frame = +2
Query: 164 VPRSRRSVTTNNENSSTANIKICAPQTPC 250
VP +R+ ++EN +A I + Q PC
Sbjct: 2920 VPSCQRNAAFDSENEVSAEINLTGSQAPC 2948
>10_08_0776 + 20486875-20487013,20487277-20487458
Length = 106
Score = 25.8 bits (54), Expect = 7.2
Identities = 12/22 (54%), Positives = 15/22 (68%)
Frame = +2
Query: 185 VTTNNENSSTANIKICAPQTPC 250
+TT N NS NI+IC +TPC
Sbjct: 1 MTTGNLNS---NIRICLTKTPC 19
>07_03_0636 +
20168180-20168462,20168961-20170303,20170401-20170678,
20170790-20170821,20170908-20171314,20171401-20171847
Length = 929
Score = 25.8 bits (54), Expect = 7.2
Identities = 11/28 (39%), Positives = 18/28 (64%)
Frame = -3
Query: 134 GVLSNFDSLLPAAVLPVNEIRMNE*NSD 51
G L FDS++ AV+P E+ + + N+D
Sbjct: 41 GALFTFDSVIGRAVMPAIELAVADVNAD 68
>06_02_0079 -
11512747-11512770,11513281-11513321,11513409-11513505,
11513555-11513965,11514493-11514665,11514829-11516008
Length = 641
Score = 25.8 bits (54), Expect = 7.2
Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Frame = -2
Query: 288 CIILPVGL*-TDQAQGVCGAHILIFAVLLFSLFVV 187
CI LP L +++ Q CG + +LFSLFV+
Sbjct: 501 CIALPCALFGSNKWQTCCGESVARVGFMLFSLFVL 535
>03_06_0497 - 34332310-34334415
Length = 701
Score = 25.8 bits (54), Expect = 7.2
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = +2
Query: 107 IMNRSLIILLVSCVLAAAMVPRSRRSVTTNNE 202
I+ S++ILL++ AA+V RSRR E
Sbjct: 312 ILLLSVVILLLAAAAVAALVVRSRRYAEEEEE 343
>02_03_0249 + 16826157-16827578,16827775-16827777
Length = 474
Score = 25.8 bits (54), Expect = 7.2
Identities = 9/24 (37%), Positives = 15/24 (62%)
Frame = +1
Query: 4 RGLVPPRADAHLAFISSLFHSFIR 75
RG+ PPR +H+A ++H + R
Sbjct: 269 RGVPPPRCTSHVAMYGLMWHCYRR 292
>12_02_1059 - 25744184-25745334,25745595-25746262,25747376-25747902
Length = 781
Score = 25.4 bits (53), Expect = 9.5
Identities = 15/43 (34%), Positives = 23/43 (53%)
Frame = +2
Query: 101 PAIMNRSLIILLVSCVLAAAMVPRSRRSVTTNNENSSTANIKI 229
PA+ R +IIL + V+A+A V RS + S+T N +
Sbjct: 182 PAMAPRLVIILFLLAVVASAAVARSNYEEPLWPDCSTTGNYTV 224
>04_04_0824 - 28399144-28399385,28400193-28400312,28400422-28400453,
28400531-28400625,28400713-28400786,28400883-28401018,
28401096-28401333,28401508-28401555,28401593-28401780,
28401862-28401983,28402061-28402226,28402321-28402443,
28403068-28403139,28403244-28403351,28404212-28404328,
28404458-28404596,28404702-28404808,28404904-28405013,
28405141-28405274,28405348-28405497,28405571-28405791,
28405868-28406677,28410261-28410473
Length = 1254
Score = 25.4 bits (53), Expect = 9.5
Identities = 14/37 (37%), Positives = 20/37 (54%)
Frame = +1
Query: 10 LVPPRADAHLAFISSLFHSFIRISFTGSTAAGNNESK 120
+VPP AHLA + F+ S +GS A+G S+
Sbjct: 1134 IVPPAYYAHLAAFRARFYMEPETSDSGSMASGAATSR 1170
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,133,141
Number of Sequences: 37544
Number of extensions: 178829
Number of successful extensions: 470
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 462
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 469
length of database: 14,793,348
effective HSP length: 71
effective length of database: 12,127,724
effective search space used: 388087168
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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